YCED_ECOLI
ID YCED_ECOLI Reviewed; 173 AA.
AC P0AB28; P14189;
DT 11-OCT-2005, integrated into UniProtKB/Swiss-Prot.
DT 11-OCT-2005, sequence version 1.
DT 03-AUG-2022, entry version 105.
DE RecName: Full=Large ribosomal RNA subunit accumulation protein YceD;
DE AltName: Full=23S rRNA accumulation protein YceD {ECO:0000303|PubMed:27574185};
DE AltName: Full=G30K {ECO:0000303|PubMed:2477362};
GN Name=yceD; Synonyms=g30k {ECO:0000303|PubMed:2477362};
GN OrderedLocusNames=b1088, JW1074;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND INDUCTION.
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=2477362; DOI=10.1128/jb.171.10.5707-5712.1989;
RA Tanaka Y., Tsujimura A., Fujita N., Isono S., Isono K.;
RT "Cloning and analysis of an Escherichia coli operon containing the rpmF
RT gene for ribosomal protein L32 and the gene for a 30-kilodalton protein.";
RL J. Bacteriol. 171:5707-5712(1989).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=8905232; DOI=10.1093/dnares/3.3.137;
RA Oshima T., Aiba H., Baba T., Fujita K., Hayashi K., Honjo A., Ikemoto K.,
RA Inada T., Itoh T., Kajihara M., Kanai K., Kashimoto K., Kimura S.,
RA Kitagawa M., Makino K., Masuda S., Miki T., Mizobuchi K., Mori H.,
RA Motomura K., Nakamura Y., Nashimoto H., Nishio Y., Saito N., Sampei G.,
RA Seki Y., Tagami H., Takemoto K., Wada C., Yamamoto Y., Yano M.,
RA Horiuchi T.;
RT "A 718-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT the 12.7-28.0 min region on the linkage map.";
RL DNA Res. 3:137-155(1996).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [5]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-72.
RC STRAIN=K12;
RX PubMed=1447160; DOI=10.1128/jb.174.23.7873-7874.1992;
RA Oh W., Larson T.J.;
RT "Physical locations of genes in the rne (ams)-rpmF-plsX-fab region of the
RT Escherichia coli K-12 chromosome.";
RL J. Bacteriol. 174:7873-7874(1992).
RN [6]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RC STRAIN=K12 / BW25113;
RX PubMed=27574185; DOI=10.1093/jxb/erw311;
RA Yang J., Suzuki M., McCarty D.R.;
RT "Essential role of conserved DUF177A protein in plastid 23S rRNA
RT accumulation and plant embryogenesis.";
RL J. Exp. Bot. 67:5447-5460(2016).
CC -!- FUNCTION: Plays a role in synthesis, processing and/or stability of 23S
CC rRNA. {ECO:0000305|PubMed:27574185}.
CC -!- INDUCTION: Part of the yceD-rpmF operon. {ECO:0000269|PubMed:2477362}.
CC -!- DISRUPTION PHENOTYPE: Accumulates reduced levels of 23S rRNA, no
CC significant difference in 16S or 5S rRNA levels, nor in rpmF
CC transcripts (ribosomal protein L32, next gene in its operon). No
CC visible growth defects on rich medium at 37 or 25 degrees Celsius.
CC {ECO:0000269|PubMed:27574185}.
CC -!- SIMILARITY: Belongs to the DUF177 domain family. {ECO:0000305}.
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DR EMBL; M29698; AAA24574.1; -; Genomic_DNA.
DR EMBL; U00096; AAC74172.1; -; Genomic_DNA.
DR EMBL; AP009048; BAA35896.1; -; Genomic_DNA.
DR EMBL; M96791; AAA23830.1; -; Genomic_DNA.
DR PIR; JV0047; JV0047.
DR RefSeq; NP_415606.1; NC_000913.3.
DR RefSeq; WP_001174481.1; NZ_STEB01000016.1.
DR AlphaFoldDB; P0AB28; -.
DR BioGRID; 4261028; 16.
DR BioGRID; 850022; 1.
DR IntAct; P0AB28; 11.
DR STRING; 511145.b1088; -.
DR jPOST; P0AB28; -.
DR PaxDb; P0AB28; -.
DR PRIDE; P0AB28; -.
DR EnsemblBacteria; AAC74172; AAC74172; b1088.
DR EnsemblBacteria; BAA35896; BAA35896; BAA35896.
DR GeneID; 67414281; -.
DR GeneID; 945650; -.
DR KEGG; ecj:JW1074; -.
DR KEGG; eco:b1088; -.
DR PATRIC; fig|511145.12.peg.1131; -.
DR EchoBASE; EB1109; -.
DR eggNOG; COG1399; Bacteria.
DR HOGENOM; CLU_094127_2_1_6; -.
DR InParanoid; P0AB28; -.
DR OMA; TLLCQRC; -.
DR PhylomeDB; P0AB28; -.
DR BioCyc; EcoCyc:EG11119-MON; -.
DR PRO; PR:P0AB28; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0005829; C:cytosol; IDA:EcoCyc.
DR GO; GO:0042254; P:ribosome biogenesis; IEA:UniProtKB-KW.
DR InterPro; IPR003772; YceD.
DR InterPro; IPR039255; YceD_bac.
DR PANTHER; PTHR38099; PTHR38099; 1.
DR Pfam; PF02620; YceD; 1.
PE 2: Evidence at transcript level;
KW Reference proteome; Ribosome biogenesis.
FT CHAIN 1..173
FT /note="Large ribosomal RNA subunit accumulation protein
FT YceD"
FT /id="PRO_0000168811"
SQ SEQUENCE 173 AA; 19315 MW; B9A75B15F13BF6C8 CRC64;
MQKVKLPLTL DPVRTAQKRL DYQGIYTPDQ VERVAESVVS VDSDVECSMS FAIDNQRLAV
LNGDAKVTVT LECQRCGKPF THQVYTTYCF SPVRSDEQAE ALPEAYEPIE VNEFGEIDLL
AMVEDEIILA LPVVPVHDSE HCEVSEADMV FGELPEEAQK PNPFAVLASL KRK
