YCF2_SOLLC
ID YCF2_SOLLC Reviewed; 2278 AA.
AC P61242; Q2A7A6; Q2MI38;
DT 10-MAY-2004, integrated into UniProtKB/Swiss-Prot.
DT 07-MAR-2006, sequence version 2.
DT 03-AUG-2022, entry version 93.
DE RecName: Full=Protein Ycf2;
GN Name=ycf2-A;
GN and
GN Name=ycf2-B;
OS Solanum lycopersicum (Tomato) (Lycopersicon esculentum).
OG Plastid; Chloroplast.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum;
OC Solanum subgen. Lycopersicon.
OX NCBI_TaxID=4081;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. LA3023;
RX PubMed=16575560; DOI=10.1007/s00122-006-0254-x;
RA Daniell H., Lee S.-B., Grevich J., Saski C., Quesada-Vargas T., Guda C.,
RA Tomkins J., Jansen R.K.;
RT "Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum
RT lycopersicum and comparative analyses with other Solanaceae genomes.";
RL Theor. Appl. Genet. 112:1503-1518(2006).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. IPA-6;
RX PubMed=16830097; DOI=10.1007/s00239-005-0254-5;
RA Kahlau S., Aspinall S., Gray J.C., Bock R.;
RT "Sequence of the tomato chloroplast DNA and evolutionary comparison of
RT solanaceous plastid genomes.";
RL J. Mol. Evol. 63:194-207(2006).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 2124-2155.
RC STRAIN=cv. Count II, and cv. Traveler 76; TISSUE=Fruit;
RX PubMed=1718481; DOI=10.1007/bf00028734;
RA Richards C.M., Hinman S.B., Boyer C.D., Hardison R.C.;
RT "Survey of plastid RNA abundance during tomato fruit ripening: the amounts
RT of RNA from the ORF 2280 region increase in chromoplasts.";
RL Plant Mol. Biol. 17:1179-1188(1991).
RN [4]
RP DETECTION OF THE PROTEIN.
RC STRAIN=cv. Count II; TISSUE=Flower, Fruit, and Green leaf;
RX PubMed=7874744; DOI=10.1007/bf00309939;
RA Richards C.M., Hardison R.C., Boyer C.D.;
RT "Expression of the large plastid gene, ORF2280, in tomato fruits and
RT flowers.";
RL Curr. Genet. 26:494-496(1994).
CC -!- FUNCTION: Probable ATPase of unknown function. Its presence in a non-
CC photosynthetic plant (Epifagus virginiana) and experiments in tobacco
CC indicate that it has an essential function which is probably not
CC related to photosynthesis.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast stroma. Plastid, chromoplast
CC stroma.
CC -!- DEVELOPMENTAL STAGE: Very little protein is seen in green leaves, the
CC proteins detected were 170, 140 and 110 kDa. 170, 68 and 59 kDa
CC proteins are seen in immature fruit, while more mature fruit and
CC flowers have only the 68 and 59 kDa proteins. It is not clear which
CC parts of the protein are stably expressed.
CC -!- SIMILARITY: Belongs to the Ycf2 family. {ECO:0000305}.
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DR EMBL; DQ347959; ABC56364.1; -; Genomic_DNA.
DR EMBL; DQ347959; ABC56343.1; -; Genomic_DNA.
DR EMBL; AM087200; CAJ32437.1; -; Genomic_DNA.
DR EMBL; AM087200; CAJ32457.1; -; Genomic_DNA.
DR EMBL; S66464; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; AP_004971.1; AC_000188.1.
DR RefSeq; AP_004991.1; AC_000188.1.
DR RefSeq; XP_004228571.1; XM_004228523.3.
DR RefSeq; YP_008563132.1; NC_007898.3.
DR RefSeq; YP_008563151.1; NC_007898.3.
DR AlphaFoldDB; P61242; -.
DR STRING; 4081.Solyc01g007640.2.1; -.
DR PaxDb; P61242; -.
DR PRIDE; P61242; -.
DR GeneID; 3950378; -.
DR GeneID; 3950481; -.
DR KEGG; sly:3950378; -.
DR KEGG; sly:3950481; -.
DR eggNOG; ENOG502QRDV; Eukaryota.
DR HOGENOM; CLU_235036_0_0_1; -.
DR InParanoid; P61242; -.
DR OrthoDB; 10010at2759; -.
DR PhylomeDB; P61242; -.
DR Proteomes; UP000004994; Chloroplast.
DR ExpressionAtlas; P61242; baseline and differential.
DR GO; GO:0009570; C:chloroplast stroma; IEA:UniProtKB-SubCell.
DR GO; GO:0009575; C:chromoplast stroma; IEA:UniProtKB-SubCell.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR Gene3D; 3.40.50.300; -; 1.
DR HAMAP; MF_01330; Ycf2; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003959; ATPase_AAA_core.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR008543; Uncharacterised_Ycf2.
DR PANTHER; PTHR33078:SF22; PTHR33078:SF22; 3.
DR Pfam; PF00004; AAA; 1.
DR Pfam; PF05695; DUF825; 1.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF52540; SSF52540; 1.
PE 2: Evidence at transcript level;
KW ATP-binding; Chloroplast; Chromoplast; Nucleotide-binding; Plastid;
KW Reference proteome.
FT CHAIN 1..2278
FT /note="Protein Ycf2"
FT /id="PRO_0000223056"
SQ SEQUENCE 2278 AA; 266462 MW; 429D16C8DD2CB355 CRC64;
MRGHQFKSWI FELREILREI KNSHHFLDSW TQFNSVGSFI HIFFHQERFL KLFDPRIWSI
LLSRNSQGSP SNRYFTIKGV ILFVVAVLIY RINNRNMVER KNLYLIGLLP IPMNSIGPRN
DTLEESVGSS NINRLIVSLL YLPKGKKISE SCFLNPKEST WVLPITKKCS MPESNWGSRW
WRNWIGKKRD SSCKISNETV AGIEILFKEK DLKYLEFLFV YYMDDPIRKD HDWELFDRLS
LRKSRNRINL NSGPLFEILV KHWISYLMSA FREKIPIEVE GFFKQQGAGS TIQSNDIEHV
SHLFSRNKWA ISLQNCAQFH MWQFRQDLFV SWGKNPPESD FLRNVSRENW IWLDNVWLVN
KDRFFSKVQN VSSNIQYDST RSSFVQVTDS SQLKGSSDQS RDHLDSISNE DSEYHTLINQ
REIQQRKERS ILWDPSFLQT ERKEIESGRF PKCLSGYSSM SRLFTEREKQ MINHLFPEEI
EEFLGNPTRS VRSFFSDRWS ELHLGSNPTE RSTRDQKLLK KQQDLSFVPS RRSEKKEMVN
IFKIITYLQN TVSIHPISSD PGCDMVPKDE PDMDSSNKIS FLNKNPFFDL FHLFHDRNRG
GYTLHYDFAS EERFQEMADL FTLSITEPDL VYHKGFAFSI DSCGLDQKQF LNEARDESKK
KSLLVLPPIF YEENESFSRR IRKKWVRISC GNDLEDPKPK IVVFASNNIM EAVTQYRLIR
NLIQIQYSTY GYIRNVLNRF FLMNRSDRNF EYGIQRDQIG KDTLNHRTIM KYTINQYLSN
LKKSQKKWFE PLILISRTER SMNRDPDAYR YKWSNGSKSF QEHLEQSVSK QKSRFQVVFD
RLRINQYSID WSEVIDKKDL SKSLRFFLSK SLLFLSKLLL FLSNSLPFFC VSFGNIPIHR
SEIYIYEELK GPNDQLCNQL LESIGLQIVH LKKLKPFLLD DHDTSQKSKF LINGGTISPF
LFNKIPKWMI DSFHTRNNRR KSFDNPDSYF SMIFHDQDNW LNPVKPFHRS SLISSFYKAN
RLRFLNNPHH FCFYWNTRFP FSVEKARINN SDFTYGQFLN ILFIRNKIFS LCVGKKKHAF
WGRDTISPIE SQVSNIFIPN DFPQSGDETY NLYKSFHFPS RSDPFVRRAI YSIADISGTP
LTEGQIVNFE RTYCQPLSDM NLSDSEGKNL HQYLNFNSNM GLIHTPCSEK DLSSEKRKKW
SLCLKKCVEK GQTYRTFQRD SAFSTLSKWN LFQTYMPWFL TSTGYKYLNL IFLDTFSDLL
PILSSSQKFV SIFPDIMHGS GISWRILQKK LCLPQWNLIS EISSKCLHNL LLSEEMIHRN
NESPLISTHL RSPNAREFLY SILFLLLVAG YLVRTHLLFV SRASSELQTE FERVKSLMTP
SSMIELRKLL DRYPTSEPNS FWLKNLFLVA LEQLGDSLEE IRGSASGGNM LGPAYGVKSI
RSKKKDWNIN LIEIIDLIPN PINRITFSRN TRHLSHTSKE IYSLIRKRKN VNGDWIDEKI
ESWVANSDSI DDEEREFLVQ FSTLTTENRI DQILLSLTHS DHLSKNDSGY QMIEQPGAIY
LRYLVDIHKK HLMNYEFNPS CLAERRIFLA HYQTITYSQT SCGENSFHFP SHGKPFSLRL
ALSPSRGILV IGSIGTGRSY LVKYLATNSY VPFITVFLNK FLDNKSKGFL LDEIDIDDSD
DIDDSDNLDA SDDIDRDLDT ELELLTRMNG LTVDMMPEID RFYITLQFEL AKAMSPCIIW
IPNIHDLDVN ESNDLSLGLL VNHLSRDCER CSTRNILVIA STHIPQKVDP ALIAPNKLNT
CIKIRRLLIP QQRKHFFTLS YTRGFHLEKK MFHTNGFGSI TMGSNARDLV ALTNEVLSIS
ITQKKSIIDT NTIRSALHRQ TWDLRSQVRS VQDHGILFYQ IGRAVAQNVL LSNCPIDPIS
IYMKKKSCNE GDSYLYKWYF ELGTSMKRLT ILLYLLSCSA GSVAQDLWSL SVPDEKNGIT
SYGLVENDSD LVHGLLEVEG ALVGSSRTEK DCSQFDNDRV TLLLRPEPRN PLDMMQKGSW
SILDQRFLYE KYESEFEEGE GEGALDPQED LFNHIVWAPR IWRPWGFLFD CIERPNELGF
PYWSRSFRGK RIIYDEEDEL QENDSGFLQS GTMQYQTRDR SQGLFRISQF IWDPADPLFF
LFKDQPPGSV FSHRELFADE EMSKGLLTSQ TDPPTSLYKR WFIKNTQEKH FELLINRQRW
LRTNSSLSNG SFRSNTLSES YQYLSNLFLS NGTLLDQMPK TLLRKRWLFP DEMKIGFM
