YCIF_ECOLI
ID YCIF_ECOLI Reviewed; 166 AA.
AC P21362;
DT 01-MAY-1991, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-1991, sequence version 1.
DT 03-AUG-2022, entry version 149.
DE RecName: Full=Protein YciF;
GN Name=yciF; OrderedLocusNames=b1258, JW1250;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=K12;
RX PubMed=3058546; DOI=10.1093/genetics/120.2.345;
RA Stoltzfus A., Leslie J.F., Milkman R.;
RT "Molecular evolution of the Escherichia coli chromosome. I. Analysis of
RT structure and natural variation in a previously uncharacterized region
RT between trp and tonB.";
RL Genetics 120:345-358(1988).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=K12, and Various ECOR strains;
RA Milkman R.;
RL Submitted (MAR-1995) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=9097039; DOI=10.1093/dnares/3.6.363;
RA Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K., Itoh T.,
RA Kasai H., Kashimoto K., Kimura S., Kitakawa M., Kitagawa M., Makino K.,
RA Miki T., Mizobuchi K., Mori H., Mori T., Motomura K., Nakade S.,
RA Nakamura Y., Nashimoto H., Nishio Y., Oshima T., Saito N., Sampei G.,
RA Seki Y., Sivasundaram S., Tagami H., Takeda J., Takemoto K., Takeuchi Y.,
RA Wada C., Yamamoto Y., Horiuchi T.;
RT "A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT the 28.0-40.1 min region on the linkage map.";
RL DNA Res. 3:363-377(1996).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [6]
RP PROTEIN SEQUENCE OF 1-20.
RC STRAIN=K12;
RX PubMed=8455549; DOI=10.1007/bf00282791;
RA Yoshida T., Ueguchi C., Yamada H., Mizuno T.;
RT "Function of the Escherichia coli nucleoid protein, H-NS: molecular
RT analysis of a subset of proteins whose expression is enhanced in a hns
RT deletion mutant.";
RL Mol. Gen. Genet. 237:113-122(1993).
RN [7]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 61-148.
RC STRAIN=976-L14;
RA Pinou T., Riley M.A.;
RL Submitted (MAY-1998) to the EMBL/GenBank/DDBJ databases.
RN [8]
RP X-RAY CRYSTALLOGRAPHY (2.0 ANGSTROMS), AND SUBUNIT.
RX PubMed=17001035; DOI=10.1110/ps.062307706;
RA Hindupur A., Liu D., Zhao Y., Bellamy H.D., White M.A., Fox R.O.;
RT "The crystal structure of the E. coli stress protein yciF.";
RL Protein Sci. 15:2605-2611(2006).
CC -!- SUBUNIT: Homodimer. {ECO:0000269|PubMed:17001035}.
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DR EMBL; X13583; CAA31920.1; -; Genomic_DNA.
DR EMBL; U25417; AAA73793.1; -; Genomic_DNA.
DR EMBL; U25419; AAA73805.1; -; Genomic_DNA.
DR EMBL; U25420; AAA73811.1; -; Genomic_DNA.
DR EMBL; U25421; AAA73817.1; -; Genomic_DNA.
DR EMBL; U25423; AAA73829.1; -; Genomic_DNA.
DR EMBL; U25427; AAA73847.1; -; Genomic_DNA.
DR EMBL; U23489; AAB60037.1; -; Genomic_DNA.
DR EMBL; U23490; AAA65142.1; -; Genomic_DNA.
DR EMBL; U23491; AAA65148.1; -; Genomic_DNA.
DR EMBL; U23492; AAA65154.1; -; Genomic_DNA.
DR EMBL; U00096; AAC74340.1; -; Genomic_DNA.
DR EMBL; AP009048; BAA14790.1; -; Genomic_DNA.
DR EMBL; AF062842; AAC16348.1; -; Genomic_DNA.
DR PIR; S07795; S07795.
DR RefSeq; NP_415774.1; NC_000913.3.
DR RefSeq; WP_001056490.1; NZ_SSZK01000031.1.
DR PDB; 2GS4; X-ray; 2.00 A; A/B=1-166.
DR PDBsum; 2GS4; -.
DR AlphaFoldDB; P21362; -.
DR SMR; P21362; -.
DR BioGRID; 4260654; 18.
DR BioGRID; 851467; 2.
DR DIP; DIP-11580N; -.
DR IntAct; P21362; 6.
DR STRING; 511145.b1258; -.
DR jPOST; P21362; -.
DR PaxDb; P21362; -.
DR PRIDE; P21362; -.
DR EnsemblBacteria; AAC74340; AAC74340; b1258.
DR EnsemblBacteria; BAA14790; BAA14790; BAA14790.
DR GeneID; 947133; -.
DR KEGG; ecj:JW1250; -.
DR KEGG; eco:b1258; -.
DR PATRIC; fig|1411691.4.peg.1025; -.
DR EchoBASE; EB1116; -.
DR eggNOG; COG3685; Bacteria.
DR HOGENOM; CLU_102561_0_0_6; -.
DR InParanoid; P21362; -.
DR OMA; AKTCEAM; -.
DR PhylomeDB; P21362; -.
DR BioCyc; EcoCyc:EG11126-MON; -.
DR EvolutionaryTrace; P21362; -.
DR PRO; PR:P21362; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0006974; P:cellular response to DNA damage stimulus; IEP:EcoliWiki.
DR Gene3D; 1.20.1260.10; -; 1.
DR InterPro; IPR010287; DUF892.
DR InterPro; IPR012347; Ferritin-like.
DR InterPro; IPR009078; Ferritin-like_SF.
DR Pfam; PF05974; DUF892; 1.
DR SUPFAM; SSF47240; SSF47240; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Direct protein sequencing; Reference proteome.
FT CHAIN 1..166
FT /note="Protein YciF"
FT /id="PRO_0000168874"
FT HELIX 6..33
FT /evidence="ECO:0007829|PDB:2GS4"
FT HELIX 38..63
FT /evidence="ECO:0007829|PDB:2GS4"
FT HELIX 76..89
FT /evidence="ECO:0007829|PDB:2GS4"
FT HELIX 95..126
FT /evidence="ECO:0007829|PDB:2GS4"
FT HELIX 130..159
FT /evidence="ECO:0007829|PDB:2GS4"
SQ SEQUENCE 166 AA; 18597 MW; 86A4B76DD8FC5EB2 CRC64;
MNMKTIEDVF IHLLSDTYSA EKQLTRALAK LARATSNEKL SQAFHAHLEE THGQIERIDQ
VVESESNLKI KRMKCVAMEG LIEEANEVIE STEKNEVRDA ALIAAAQKVE HYEIASYGTL
ATLAEQLGYR KAAKLLKETL EEEKATDIKL TDLAINNVNK KAENKA
