YCIO_ECOLI
ID YCIO_ECOLI Reviewed; 206 AA.
AC P0AFR4; P45847;
DT 20-DEC-2005, integrated into UniProtKB/Swiss-Prot.
DT 20-DEC-2005, sequence version 1.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=Uncharacterized protein YciO;
GN Name=yciO; OrderedLocusNames=b1267, JW5196;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=9097039; DOI=10.1093/dnares/3.6.363;
RA Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K., Itoh T.,
RA Kasai H., Kashimoto K., Kimura S., Kitakawa M., Kitagawa M., Makino K.,
RA Miki T., Mizobuchi K., Mori H., Mori T., Motomura K., Nakade S.,
RA Nakamura Y., Nashimoto H., Nishio Y., Oshima T., Saito N., Sampei G.,
RA Seki Y., Sivasundaram S., Tagami H., Takeda J., Takemoto K., Takeuchi Y.,
RA Wada C., Yamamoto Y., Horiuchi T.;
RT "A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT the 28.0-40.1 min region on the linkage map.";
RL DNA Res. 3:363-377(1996).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [4]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-53.
RX PubMed=6385993;
RA Gubanov V.V., Lebedev I.B., Monastyrskaia G.S., Rubtsov P.M.,
RA Skriabin K.G.;
RT "Primary structure of the E. coli DNA region preceding the tryptophan
RT operon genes.";
RL Bioorg. Khim. 10:415-417(1984).
RN [5]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 24-206.
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RA Milkman R., McKane M.;
RL Submitted (DEC-1994) to the EMBL/GenBank/DDBJ databases.
RN [6]
RP IDENTIFICATION BY MASS SPECTROMETRY.
RC STRAIN=B / BL21;
RX PubMed=10493123;
RX DOI=10.1002/(sici)1522-2683(19990801)20:11<2181::aid-elps2181>3.0.co;2-q;
RA Fountoulakis M., Takacs M.-F., Berndt P., Langen H., Takacs B.;
RT "Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite
RT chromatography.";
RL Electrophoresis 20:2181-2195(1999).
RN [7]
RP X-RAY CRYSTALLOGRAPHY (1.40 ANGSTROMS).
RG Midwest center for structural genomics (MCSG);
RA Zhang R., Dementieva I., Thorn J., Donnelly M., Joachimiak A.;
RT "Structural Genomics, protein TF1.";
RL Submitted (OCT-2001) to the PDB data bank.
RN [8]
RP X-RAY CRYSTALLOGRAPHY (2.10 ANGSTROMS).
RX PubMed=12211024; DOI=10.1002/prot.10178;
RA Jia J., Lunin V.V., Sauve V., Huang L.W., Matte A., Cygler M.;
RT "Crystal structure of the YciO protein from Escherichia coli.";
RL Proteins 49:139-141(2002).
CC -!- SIMILARITY: Belongs to the SUA5 family. {ECO:0000305}.
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DR EMBL; U00096; AAC74349.2; -; Genomic_DNA.
DR EMBL; AP009048; BAA14801.2; -; Genomic_DNA.
DR EMBL; M38366; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; U18111; AAB59987.1; -; Genomic_DNA.
DR RefSeq; NP_415783.6; NC_000913.3.
DR RefSeq; WP_001295575.1; NZ_STEB01000005.1.
DR PDB; 1K7J; X-ray; 1.40 A; A=1-206.
DR PDB; 1KK9; X-ray; 2.10 A; A=1-206.
DR PDBsum; 1K7J; -.
DR PDBsum; 1KK9; -.
DR AlphaFoldDB; P0AFR4; -.
DR SMR; P0AFR4; -.
DR BioGRID; 4260126; 26.
DR STRING; 511145.b1267; -.
DR jPOST; P0AFR4; -.
DR PaxDb; P0AFR4; -.
DR PRIDE; P0AFR4; -.
DR EnsemblBacteria; AAC74349; AAC74349; b1267.
DR EnsemblBacteria; BAA14801; BAA14801; BAA14801.
DR GeneID; 67417414; -.
DR GeneID; 945854; -.
DR KEGG; ecj:JW5196; -.
DR KEGG; eco:b1267; -.
DR PATRIC; fig|1411691.4.peg.1017; -.
DR EchoBASE; EB2796; -.
DR eggNOG; COG0009; Bacteria.
DR HOGENOM; CLU_031397_3_0_6; -.
DR InParanoid; P0AFR4; -.
DR OMA; MLYPTDT; -.
DR PhylomeDB; P0AFR4; -.
DR BioCyc; EcoCyc:G6635-MON; -.
DR EvolutionaryTrace; P0AFR4; -.
DR PRO; PR:P0AFR4; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0005829; C:cytosol; IDA:EcoCyc.
DR GO; GO:0003725; F:double-stranded RNA binding; IEA:InterPro.
DR InterPro; IPR017945; DHBP_synth_RibB-like_a/b_dom.
DR InterPro; IPR006070; YrdC-like_dom.
DR Pfam; PF01300; Sua5_yciO_yrdC; 1.
DR SUPFAM; SSF55821; SSF55821; 1.
DR TIGRFAMs; TIGR00057; TIGR00057; 1.
DR PROSITE; PS51163; YRDC; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome.
FT CHAIN 1..206
FT /note="Uncharacterized protein YciO"
FT /id="PRO_0000202014"
FT DOMAIN 14..200
FT /note="YrdC-like"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00518"
FT STRAND 3..6
FT /evidence="ECO:0007829|PDB:1K7J"
FT STRAND 9..11
FT /evidence="ECO:0007829|PDB:1K7J"
FT HELIX 14..25
FT /evidence="ECO:0007829|PDB:1K7J"
FT STRAND 30..34
FT /evidence="ECO:0007829|PDB:1K7J"
FT STRAND 37..43
FT /evidence="ECO:0007829|PDB:1K7J"
FT HELIX 47..57
FT /evidence="ECO:0007829|PDB:1K7J"
FT STRAND 66..68
FT /evidence="ECO:0007829|PDB:1K7J"
FT HELIX 72..78
FT /evidence="ECO:0007829|PDB:1K7J"
FT HELIX 83..90
FT /evidence="ECO:0007829|PDB:1K7J"
FT STRAND 94..103
FT /evidence="ECO:0007829|PDB:1K7J"
FT HELIX 109..111
FT /evidence="ECO:0007829|PDB:1K7J"
FT TURN 114..116
FT /evidence="ECO:0007829|PDB:1K7J"
FT STRAND 118..122
FT /evidence="ECO:0007829|PDB:1K7J"
FT HELIX 127..136
FT /evidence="ECO:0007829|PDB:1K7J"
FT STRAND 140..144
FT /evidence="ECO:0007829|PDB:1K7J"
FT STRAND 151..153
FT /evidence="ECO:0007829|PDB:1K7J"
FT HELIX 157..164
FT /evidence="ECO:0007829|PDB:1K7J"
FT TURN 165..167
FT /evidence="ECO:0007829|PDB:1K7J"
FT STRAND 169..173
FT /evidence="ECO:0007829|PDB:1K7J"
FT STRAND 183..186
FT /evidence="ECO:0007829|PDB:1K7J"
FT HELIX 188..190
FT /evidence="ECO:0007829|PDB:1K7J"
FT STRAND 193..196
FT /evidence="ECO:0007829|PDB:1K7J"
FT HELIX 203..205
FT /evidence="ECO:0007829|PDB:1K7J"
SQ SEQUENCE 206 AA; 23212 MW; BFE565F4087E48B4 CRC64;
MSQFFYIHPD NPQQRLINQA VEIVRKGGVI VYPTDSGYAL GCKIEDKNAM ERICRIRQLP
DGHNFTLMCR DLSELSTYSF VDNVAFRLMK NNTPGNYTFI LKGTKEVPRR LLQEKRKTIG
MRVPSNPIAQ ALLEALGEPM LSTSLMLPGS EFTESDPEEI KDRLEKQVDL IIHGGYLGQK
PTTVIDLTDD TPVVVREGVG DVKPFL
