YCJF_ECOLI
ID YCJF_ECOLI Reviewed; 353 AA.
AC P0A8R7; P45525; P77177;
DT 07-JUN-2005, integrated into UniProtKB/Swiss-Prot.
DT 07-JUN-2005, sequence version 1.
DT 03-AUG-2022, entry version 114.
DE RecName: Full=UPF0283 membrane protein YcjF;
GN Name=ycjF; OrderedLocusNames=b1322, JW1315;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=9097039; DOI=10.1093/dnares/3.6.363;
RA Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K., Itoh T.,
RA Kasai H., Kashimoto K., Kimura S., Kitakawa M., Kitagawa M., Makino K.,
RA Miki T., Mizobuchi K., Mori H., Mori T., Motomura K., Nakade S.,
RA Nakamura Y., Nashimoto H., Nishio Y., Oshima T., Saito N., Sampei G.,
RA Seki Y., Sivasundaram S., Tagami H., Takeda J., Takemoto K., Takeuchi Y.,
RA Wada C., Yamamoto Y., Horiuchi T.;
RT "A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT the 28.0-40.1 min region on the linkage map.";
RL DNA Res. 3:363-377(1996).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [4]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 298-353.
RC STRAIN=K12;
RX PubMed=3001057; DOI=10.1016/s0021-9258(17)42487-2;
RA Cornish E.C., Argyropoulos V.P., Pittard J., Davidson B.E.;
RT "Structure of the Escherichia coli K12 regulatory gene tyrR. Nucleotide
RT sequence and sites of initiation of transcription and translation.";
RL J. Biol. Chem. 261:403-410(1986).
RN [5]
RP IDENTIFICATION.
RX PubMed=7567469; DOI=10.1093/nar/23.17.3554;
RA Borodovsky M., McIninch J., Koonin E.V., Rudd K.E., Medigue C., Danchin A.;
RT "Detection of new genes in a bacterial genome using Markov models for three
RT gene classes.";
RL Nucleic Acids Res. 23:3554-3562(1995).
RN [6]
RP TOPOLOGY [LARGE SCALE ANALYSIS].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=15919996; DOI=10.1126/science.1109730;
RA Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.;
RT "Global topology analysis of the Escherichia coli inner membrane
RT proteome.";
RL Science 308:1321-1323(2005).
CC -!- SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane protein.
CC -!- SIMILARITY: Belongs to the UPF0283 family. {ECO:0000305}.
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DR EMBL; U00096; AAC74404.1; -; Genomic_DNA.
DR EMBL; AP009048; BAA14903.1; -; Genomic_DNA.
DR EMBL; M12114; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR PIR; E64881; E64881.
DR RefSeq; NP_415838.1; NC_000913.3.
DR RefSeq; WP_000138728.1; NZ_SSZK01000012.1.
DR AlphaFoldDB; P0A8R7; -.
DR BioGRID; 4260149; 14.
DR DIP; DIP-48099N; -.
DR IntAct; P0A8R7; 9.
DR STRING; 511145.b1322; -.
DR jPOST; P0A8R7; -.
DR PaxDb; P0A8R7; -.
DR PRIDE; P0A8R7; -.
DR EnsemblBacteria; AAC74404; AAC74404; b1322.
DR EnsemblBacteria; BAA14903; BAA14903; BAA14903.
DR GeneID; 945878; -.
DR KEGG; ecj:JW1315; -.
DR KEGG; eco:b1322; -.
DR PATRIC; fig|1411691.4.peg.956; -.
DR EchoBASE; EB2711; -.
DR eggNOG; COG3768; Bacteria.
DR HOGENOM; CLU_057693_2_0_6; -.
DR InParanoid; P0A8R7; -.
DR OMA; MFFIAWR; -.
DR PhylomeDB; P0A8R7; -.
DR BioCyc; EcoCyc:EG12870-MON; -.
DR PRO; PR:P0A8R7; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IDA:EcoCyc.
DR HAMAP; MF_01085; UPF0283; 1.
DR InterPro; IPR021147; DUF697.
DR InterPro; IPR006507; UPF0283.
DR PANTHER; PTHR39342; PTHR39342; 1.
DR Pfam; PF05128; DUF697; 1.
DR TIGRFAMs; TIGR01620; hyp_HI0043; 1.
PE 1: Evidence at protein level;
KW Cell inner membrane; Cell membrane; Membrane; Reference proteome;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..353
FT /note="UPF0283 membrane protein YcjF"
FT /id="PRO_0000214172"
FT TOPO_DOM 1..69
FT /note="Periplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 70..90
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 91..99
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 100..120
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 121..212
FT /note="Periplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 213..233
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 234..353
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT CONFLICT 349
FT /note="T -> S (in Ref. 4)"
FT /evidence="ECO:0000305"
FT CONFLICT 351..353
FT /note="SEK -> AKNNAISGADRISLRRSARFSVFVSMIVDRNLPAIQIVSYHHINC
FT SFFR (in Ref. 4)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 353 AA; 39392 MW; 6CEF0B857997515D CRC64;
MTEPLKPRID FDGPLEVDQN PKFRAQQTFD ENQAQNFAPA TLDEAQEEEG QVEAVMDAAL
RPKRSLWRKM VMGGLALFGA SVVGQGVQWT MNAWQTQDWV ALGGCAAGAL IIGAGVGSVV
TEWRRLWRLR QRAHERDEAR DLLHSHGTGK GRAFCEKLAQ QAGIDQSHPA LQRWYASIHE
TQNDREVVSL YAHLVQPVLD AQARREISRS AAESTLMIAV SPLALVDMAF IAWRNLRLIN
RIATLYGIEL GYYSRLRLFK LVLLNIAFAG ASELVREVGM DWMSQDLAAR LSTRAAQGIG
AGLLTARLGI KAMELCRPLP WIDDDKPRLG DFRRQLIGQV KETLQKGKTP SEK
