YDCI_ECOLI
ID YDCI_ECOLI Reviewed; 307 AA.
AC P77171;
DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot.
DT 15-DEC-1998, sequence version 2.
DT 03-AUG-2022, entry version 145.
DE RecName: Full=Uncharacterized HTH-type transcriptional regulator YdcI;
GN Name=ydcI; OrderedLocusNames=b1422, JW5226;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=9097039; DOI=10.1093/dnares/3.6.363;
RA Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K., Itoh T.,
RA Kasai H., Kashimoto K., Kimura S., Kitakawa M., Kitagawa M., Makino K.,
RA Miki T., Mizobuchi K., Mori H., Mori T., Motomura K., Nakade S.,
RA Nakamura Y., Nashimoto H., Nishio Y., Oshima T., Saito N., Sampei G.,
RA Seki Y., Sivasundaram S., Tagami H., Takeda J., Takemoto K., Takeuchi Y.,
RA Wada C., Yamamoto Y., Horiuchi T.;
RT "A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT the 28.0-40.1 min region on the linkage map.";
RL DNA Res. 3:363-377(1996).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
CC -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC {ECO:0000305}.
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DR EMBL; U00096; AAC74504.2; -; Genomic_DNA.
DR EMBL; AP009048; BAA15045.2; -; Genomic_DNA.
DR PIR; A64894; A64894.
DR RefSeq; NP_415939.2; NC_000913.3.
DR RefSeq; WP_000414567.1; NZ_SSZK01000021.1.
DR AlphaFoldDB; P77171; -.
DR SMR; P77171; -.
DR BioGRID; 4260183; 10.
DR STRING; 511145.b1422; -.
DR jPOST; P77171; -.
DR PaxDb; P77171; -.
DR PRIDE; P77171; -.
DR EnsemblBacteria; AAC74504; AAC74504; b1422.
DR EnsemblBacteria; BAA15045; BAA15045; BAA15045.
DR GeneID; 948865; -.
DR KEGG; ecj:JW5226; -.
DR KEGG; eco:b1422; -.
DR PATRIC; fig|1411691.4.peg.848; -.
DR EchoBASE; EB3515; -.
DR eggNOG; COG0583; Bacteria.
DR HOGENOM; CLU_039613_6_0_6; -.
DR InParanoid; P77171; -.
DR OMA; HLYSEQV; -.
DR PhylomeDB; P77171; -.
DR BioCyc; EcoCyc:G6737-MON; -.
DR PRO; PR:P77171; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IDA:EcoCyc.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IDA:EcoCyc.
DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IDA:EcoCyc.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR Gene3D; 1.10.10.10; -; 1.
DR InterPro; IPR005119; LysR_subst-bd.
DR InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR Pfam; PF00126; HTH_1; 1.
DR Pfam; PF03466; LysR_substrate; 1.
DR PRINTS; PR00039; HTHLYSR.
DR SUPFAM; SSF46785; SSF46785; 1.
DR PROSITE; PS50931; HTH_LYSR; 1.
PE 3: Inferred from homology;
KW DNA-binding; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..307
FT /note="Uncharacterized HTH-type transcriptional regulator
FT YdcI"
FT /id="PRO_0000105783"
FT DOMAIN 11..68
FT /note="HTH lysR-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00253"
FT DNA_BIND 28..47
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00253"
SQ SEQUENCE 307 AA; 33402 MW; 186FCA75B38F2A43 CRC64;
MEKNSLFSQR IRLRHLHTFV AVAQQGTLGR AAETLNLSQP ALSKTLNELE QLTGARLFER
GRQGAQLTLP GEQFLTHAVR VLDAINTAGR SLHRKEGLNN DVVRVGALPT AALGILPSVI
GQFHQQQKET TLQVATMSNP MILAGLKTGE IDIGIGRMSD PELMTGLNYE LLFLESLKLV
VRPNHPLLQE NVTLSRVLEW PVVVSPEGTA PRQHSDALVQ SQGCKIPSGC IETLSASLSR
QLTVEYDYVW FVPSGAVKDD LRHATLVALP VPGHGAGEPI GILTRVDATF SSGCQLMINA
IRKSMPF
