YDCV_SHIFL
ID YDCV_SHIFL Reviewed; 264 AA.
AC P0AFS0; P77505;
DT 20-DEC-2005, integrated into UniProtKB/Swiss-Prot.
DT 20-DEC-2005, sequence version 1.
DT 25-MAY-2022, entry version 97.
DE RecName: Full=Inner membrane ABC transporter permease protein YdcV {ECO:0000250|UniProtKB:P0AFR9};
GN Name=ydcV; OrderedLocusNames=SF1774.1, S1906;
OS Shigella flexneri.
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Shigella.
OX NCBI_TaxID=623;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=301 / Serotype 2a;
RX PubMed=12384590; DOI=10.1093/nar/gkf566;
RA Jin Q., Yuan Z., Xu J., Wang Y., Shen Y., Lu W., Wang J., Liu H., Yang J.,
RA Yang F., Zhang X., Zhang J., Yang G., Wu H., Qu D., Dong J., Sun L.,
RA Xue Y., Zhao A., Gao Y., Zhu J., Kan B., Ding K., Chen S., Cheng H.,
RA Yao Z., He B., Chen R., Ma D., Qiang B., Wen Y., Hou Y., Yu J.;
RT "Genome sequence of Shigella flexneri 2a: insights into pathogenicity
RT through comparison with genomes of Escherichia coli K12 and O157.";
RL Nucleic Acids Res. 30:4432-4441(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700930 / 2457T / Serotype 2a;
RX PubMed=12704152; DOI=10.1128/iai.71.5.2775-2786.2003;
RA Wei J., Goldberg M.B., Burland V., Venkatesan M.M., Deng W., Fournier G.,
RA Mayhew G.F., Plunkett G. III, Rose D.J., Darling A., Mau B., Perna N.T.,
RA Payne S.M., Runyen-Janecky L.J., Zhou S., Schwartz D.C., Blattner F.R.;
RT "Complete genome sequence and comparative genomics of Shigella flexneri
RT serotype 2a strain 2457T.";
RL Infect. Immun. 71:2775-2786(2003).
CC -!- FUNCTION: Probably part of the ABC transporter complex YdcSTUV.
CC Probably responsible for the translocation of the substrate across the
CC membrane. {ECO:0000250|UniProtKB:P0AFR9}.
CC -!- SUBCELLULAR LOCATION: Cell inner membrane
CC {ECO:0000250|UniProtKB:P0AFR9}; Multi-pass membrane protein
CC {ECO:0000255}.
CC -!- SIMILARITY: Belongs to the binding-protein-dependent transport system
CC permease family. CysTW subfamily. {ECO:0000305}.
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DR EMBL; AE005674; AAN43346.1; -; Genomic_DNA.
DR EMBL; AE014073; AAP17226.1; -; Genomic_DNA.
DR RefSeq; NP_707639.1; NC_004337.2.
DR RefSeq; WP_000555458.1; NZ_WPGW01000272.1.
DR AlphaFoldDB; P0AFS0; -.
DR SMR; P0AFS0; -.
DR STRING; 198214.SF1775; -.
DR EnsemblBacteria; AAN43346; AAN43346; SF1775.
DR EnsemblBacteria; AAP17226; AAP17226; S1906.
DR GeneID; 1024955; -.
DR KEGG; sfl:SF1775; -.
DR KEGG; sfx:S1906; -.
DR PATRIC; fig|198214.7.peg.2102; -.
DR HOGENOM; CLU_016047_3_0_6; -.
DR Proteomes; UP000001006; Chromosome.
DR Proteomes; UP000002673; Chromosome.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0055085; P:transmembrane transport; IEA:InterPro.
DR CDD; cd06261; TM_PBP2; 1.
DR Gene3D; 1.10.3720.10; -; 1.
DR InterPro; IPR000515; MetI-like.
DR InterPro; IPR035906; MetI-like_sf.
DR Pfam; PF00528; BPD_transp_1; 1.
DR SUPFAM; SSF161098; SSF161098; 1.
DR PROSITE; PS50928; ABC_TM1; 1.
PE 3: Inferred from homology;
KW Cell inner membrane; Cell membrane; Membrane; Reference proteome;
KW Transmembrane; Transmembrane helix; Transport.
FT CHAIN 1..264
FT /note="Inner membrane ABC transporter permease protein
FT YdcV"
FT /id="PRO_0000060244"
FT TOPO_DOM 1..12
FT /note="Cytoplasmic"
FT /evidence="ECO:0000305"
FT TRANSMEM 13..33
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 34..70
FT /note="Periplasmic"
FT /evidence="ECO:0000305"
FT TRANSMEM 71..91
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 92..100
FT /note="Cytoplasmic"
FT /evidence="ECO:0000305"
FT TRANSMEM 101..121
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 122..128
FT /note="Periplasmic"
FT /evidence="ECO:0000305"
FT TRANSMEM 129..149
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 150..189
FT /note="Cytoplasmic"
FT /evidence="ECO:0000305"
FT TRANSMEM 190..210
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 211..236
FT /note="Periplasmic"
FT /evidence="ECO:0000305"
FT TRANSMEM 237..257
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 258..264
FT /note="Cytoplasmic"
FT /evidence="ECO:0000250|UniProtKB:P0AFR9"
FT DOMAIN 65..252
FT /note="ABC transmembrane type-1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00441"
FT CONFLICT 250
FT /note="I -> N (in Ref. 2; AAP17226)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 264 AA; 28722 MW; 611F6181E57DB826 CRC64;
MHSERAPFFL KLAAWGGVVF LHFPILIIAA YAFNTEDAAF SFPPQGLTLR WFSVAAQRSD
ILDAVTLSLK VAALATLIAL VLGTLAAAAL WRRDFFGKNA ISLLLLLPIA LPGIVTGLAL
LTAFKTINLE PGFFTIVVGH ATFCVVVVFN NVIARFRRTS WSLVEASMDL GANGWQTFRY
VVLPNLSSAL LAGGMLAFAL SFDEIIVTTF TAGHERTLPL WLLNQLGRPR DVPVTNVVAL
LVMLVTTLPI LGAWWLTREG DNGQ
