YDDB_ECOLI
ID YDDB_ECOLI Reviewed; 790 AA.
AC P31827; P77572;
DT 01-JUL-1993, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1997, sequence version 2.
DT 03-AUG-2022, entry version 131.
DE RecName: Full=Uncharacterized protein YddB;
DE AltName: Full=CDS103;
GN Name=yddB; OrderedLocusNames=b1495, JW1490;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=K12;
RX PubMed=9116051; DOI=10.1016/s0300-9084(97)84334-9;
RA Turlin E., Gasser F., Biville F.;
RT "Sequence and functional analysis of an Escherichia coli DNA fragment able
RT to complement pqqE and pqqF mutants from Methylobacterium organophilum.";
RL Biochimie 78:823-831(1996).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=9097039; DOI=10.1093/dnares/3.6.363;
RA Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K., Itoh T.,
RA Kasai H., Kashimoto K., Kimura S., Kitakawa M., Kitagawa M., Makino K.,
RA Miki T., Mizobuchi K., Mori H., Mori T., Motomura K., Nakade S.,
RA Nakamura Y., Nashimoto H., Nishio Y., Oshima T., Saito N., Sampei G.,
RA Seki Y., Sivasundaram S., Tagami H., Takeda J., Takemoto K., Takeuchi Y.,
RA Wada C., Yamamoto Y., Horiuchi T.;
RT "A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT the 28.0-40.1 min region on the linkage map.";
RL DNA Res. 3:363-377(1996).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
CC -!- SIMILARITY: To H.influenzae HI_1369. {ECO:0000305}.
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DR EMBL; X71917; CAA50733.1; -; Genomic_DNA.
DR EMBL; U00096; AAC74568.1; -; Genomic_DNA.
DR EMBL; AP009048; BAA15166.1; -; Genomic_DNA.
DR PIR; B64903; B64903.
DR RefSeq; NP_416012.1; NC_000913.3.
DR RefSeq; WP_000832437.1; NZ_SSZK01000001.1.
DR PDB; 6OFR; X-ray; 2.40 A; A=29-790.
DR PDBsum; 6OFR; -.
DR AlphaFoldDB; P31827; -.
DR SMR; P31827; -.
DR BioGRID; 4260786; 154.
DR DIP; DIP-11661N; -.
DR IntAct; P31827; 1.
DR STRING; 511145.b1495; -.
DR TCDB; 1.B.14.19.1; the outer membrane receptor (omr) family.
DR jPOST; P31827; -.
DR PaxDb; P31827; -.
DR PRIDE; P31827; -.
DR EnsemblBacteria; AAC74568; AAC74568; b1495.
DR EnsemblBacteria; BAA15166; BAA15166; BAA15166.
DR GeneID; 945961; -.
DR KEGG; ecj:JW1490; -.
DR KEGG; eco:b1495; -.
DR PATRIC; fig|1411691.4.peg.771; -.
DR EchoBASE; EB1694; -.
DR eggNOG; COG4771; Bacteria.
DR HOGENOM; CLU_012991_1_0_6; -.
DR OMA; REFWLEV; -.
DR PhylomeDB; P31827; -.
DR BioCyc; EcoCyc:EG11743-MON; -.
DR PRO; PR:P31827; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0009279; C:cell outer membrane; IDA:EcoCyc.
DR GO; GO:0045203; C:integral component of cell outer membrane; IDA:EcoCyc.
DR Gene3D; 2.170.130.10; -; 1.
DR Gene3D; 2.40.170.20; -; 1.
DR InterPro; IPR012910; Plug_dom.
DR InterPro; IPR037066; Plug_dom_sf.
DR InterPro; IPR036942; TonB_rcpt_b-brl_sf.
DR Pfam; PF07715; Plug; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome.
FT CHAIN 1..790
FT /note="Uncharacterized protein YddB"
FT /id="PRO_0000168941"
FT CONFLICT 1..22
FT /note="MKRVLIPGVILCGADVAQAVDD -> MT (in Ref. 1)"
FT /evidence="ECO:0000305"
FT CONFLICT 279..289
FT /note="TWFASDRFTHD -> YLVCQRPLYPR (in Ref. 1; CAA50733)"
FT /evidence="ECO:0000305"
FT CONFLICT 503
FT /note="A -> T (in Ref. 1; CAA50733)"
FT /evidence="ECO:0000305"
FT CONFLICT 534..545
FT /note="TLTRYQDLKTPY -> NSDALSGFE (in Ref. 1; CAA50733)"
FT /evidence="ECO:0000305"
FT CONFLICT 573..574
FT /note="HD -> LV (in Ref. 1; CAA50733)"
FT /evidence="ECO:0000305"
FT CONFLICT 615..616
FT /note="HI -> LY (in Ref. 1; CAA50733)"
FT /evidence="ECO:0000305"
FT STRAND 37..39
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 46..50
FT /evidence="ECO:0007829|PDB:6OFR"
FT HELIX 51..56
FT /evidence="ECO:0007829|PDB:6OFR"
FT HELIX 64..68
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 74..76
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 94..96
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 105..108
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 127..129
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 135..138
FT /evidence="ECO:0007829|PDB:6OFR"
FT HELIX 142..144
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 146..151
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 166..170
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 181..189
FT /evidence="ECO:0007829|PDB:6OFR"
FT HELIX 190..192
FT /evidence="ECO:0007829|PDB:6OFR"
FT HELIX 199..201
FT /evidence="ECO:0007829|PDB:6OFR"
FT HELIX 202..207
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 220..233
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 236..255
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 261..280
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 284..301
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 304..306
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 311..327
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 329..349
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 351..358
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 368..371
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 375..391
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 394..396
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 399..418
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 422..427
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 433..439
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 442..461
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 464..475
FT /evidence="ECO:0007829|PDB:6OFR"
FT TURN 476..478
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 482..509
FT /evidence="ECO:0007829|PDB:6OFR"
FT HELIX 515..524
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 533..537
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 545..557
FT /evidence="ECO:0007829|PDB:6OFR"
FT TURN 558..560
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 561..583
FT /evidence="ECO:0007829|PDB:6OFR"
FT TURN 584..587
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 588..612
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 614..616
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 619..636
FT /evidence="ECO:0007829|PDB:6OFR"
FT TURN 638..640
FT /evidence="ECO:0007829|PDB:6OFR"
FT HELIX 641..643
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 651..654
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 657..660
FT /evidence="ECO:0007829|PDB:6OFR"
FT HELIX 661..663
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 667..669
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 673..683
FT /evidence="ECO:0007829|PDB:6OFR"
FT TURN 684..687
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 688..697
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 701..705
FT /evidence="ECO:0007829|PDB:6OFR"
FT HELIX 715..717
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 722..727
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 731..740
FT /evidence="ECO:0007829|PDB:6OFR"
FT HELIX 746..748
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 750..758
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 765..768
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 774..776
FT /evidence="ECO:0007829|PDB:6OFR"
FT STRAND 781..790
FT /evidence="ECO:0007829|PDB:6OFR"
SQ SEQUENCE 790 AA; 89283 MW; 907735A2A124E674 CRC64;
MKRVLIPGVI LCGADVAQAV DDKNMYMHFF EEMTVYAPVP VPVNGNTHYT SESIERLPTG
NGNISDLLRT NPAVRMDSTQ STSLNQGDIR PEKISIHGAS PYQNAYLIDG ISATNNLNPA
NESDASSATN ISGMSQGYYL DVSLLDNVTL YDSFVPVEFG RFNGGVIDAK IKRFNADDSK
VKLGYRTTRS DWLTSHIDEN NKSAFNQGSS GSTYYSPDFK KNFYTLSFNQ ELADNFGVTA
GLSRRQSDIT RADYVSNDGI VAGRAQYKNV IDTALSKFTW FASDRFTHDL TLKYTGSSRD
YNTSTFPQSD REMGNKSYGL AWDMDTQLAW AKLRTTVGWD HISDYTRHDH DIWYTELSCT
YGDITGRCTR GGLGHISQAV DNYTFKTRLD WQKFAVGNVS HQPYFGAEYI YSDAWTERHN
QSESYVINAA GKKTNHTIYH KGKGRLGIDN YTLYMADRIS WRNVSLMPGV RYDYDNYLSN
HNISPRFMTE WDIFANQTSM ITAGYNRYYG GNILDMGLRD IRNSWTESVS GNKTLTRYQD
LKTPYNDELA MGLQQKIGKN VIARANYVYR EAHDQISKSS RTDSATKTTI TEYNNDGKTK
THSFSLSFEL AEPLHIRQVD INPQIVFSYI KSKGNLSLNN GYEESNTGDN QVVYNGNLVS
YDSVPVADFN NPLKISLNMD FTHQPSGLVW ANTLAWQEAR KARIILGKTN AQYISEYSDY
KQYVDEKLDS SLTWDTRLSW TPQFLQQQNL TISADILNVL DSKTAVDTTN TGVATYASGR
TFWLDVSMKF
