YDFH_SHIFL
ID YDFH_SHIFL Reviewed; 228 AA.
AC P0ACM4; P77577; Q83L25;
DT 22-NOV-2005, integrated into UniProtKB/Swiss-Prot.
DT 22-NOV-2005, sequence version 1.
DT 25-MAY-2022, entry version 102.
DE RecName: Full=Uncharacterized HTH-type transcriptional regulator YdfH;
GN Name=ydfH; OrderedLocusNames=SF1555, S1680;
OS Shigella flexneri.
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Shigella.
OX NCBI_TaxID=623;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=301 / Serotype 2a;
RX PubMed=12384590; DOI=10.1093/nar/gkf566;
RA Jin Q., Yuan Z., Xu J., Wang Y., Shen Y., Lu W., Wang J., Liu H., Yang J.,
RA Yang F., Zhang X., Zhang J., Yang G., Wu H., Qu D., Dong J., Sun L.,
RA Xue Y., Zhao A., Gao Y., Zhu J., Kan B., Ding K., Chen S., Cheng H.,
RA Yao Z., He B., Chen R., Ma D., Qiang B., Wen Y., Hou Y., Yu J.;
RT "Genome sequence of Shigella flexneri 2a: insights into pathogenicity
RT through comparison with genomes of Escherichia coli K12 and O157.";
RL Nucleic Acids Res. 30:4432-4441(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 700930 / 2457T / Serotype 2a;
RX PubMed=12704152; DOI=10.1128/iai.71.5.2775-2786.2003;
RA Wei J., Goldberg M.B., Burland V., Venkatesan M.M., Deng W., Fournier G.,
RA Mayhew G.F., Plunkett G. III, Rose D.J., Darling A., Mau B., Perna N.T.,
RA Payne S.M., Runyen-Janecky L.J., Zhou S., Schwartz D.C., Blattner F.R.;
RT "Complete genome sequence and comparative genomics of Shigella flexneri
RT serotype 2a strain 2457T.";
RL Infect. Immun. 71:2775-2786(2003).
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DR EMBL; AE005674; AAN43144.1; -; Genomic_DNA.
DR EMBL; AE014073; AAP17036.1; -; Genomic_DNA.
DR RefSeq; WP_000215549.1; NZ_WPGW01000152.1.
DR AlphaFoldDB; P0ACM4; -.
DR SMR; P0ACM4; -.
DR STRING; 198214.SF1555; -.
DR EnsemblBacteria; AAN43144; AAN43144; SF1555.
DR EnsemblBacteria; AAP17036; AAP17036; S1680.
DR GeneID; 66674599; -.
DR KEGG; sfx:S1680; -.
DR PATRIC; fig|623.158.peg.1708; -.
DR HOGENOM; CLU_017584_5_2_6; -.
DR OMA; AWDTVEN; -.
DR OrthoDB; 1911275at2; -.
DR Proteomes; UP000001006; Chromosome.
DR Proteomes; UP000002673; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR CDD; cd07377; WHTH_GntR; 1.
DR Gene3D; 1.10.10.10; -; 1.
DR Gene3D; 1.20.120.530; -; 1.
DR InterPro; IPR011711; GntR_C.
DR InterPro; IPR008920; TF_FadR/GntR_C.
DR InterPro; IPR000524; Tscrpt_reg_HTH_GntR.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR Pfam; PF07729; FCD; 1.
DR Pfam; PF00392; GntR; 1.
DR PRINTS; PR00035; HTHGNTR.
DR SMART; SM00895; FCD; 1.
DR SMART; SM00345; HTH_GNTR; 1.
DR SUPFAM; SSF46785; SSF46785; 1.
DR SUPFAM; SSF48008; SSF48008; 1.
DR PROSITE; PS50949; HTH_GNTR; 1.
PE 4: Predicted;
KW DNA-binding; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..228
FT /note="Uncharacterized HTH-type transcriptional regulator
FT YdfH"
FT /id="PRO_0000050674"
FT DOMAIN 11..78
FT /note="HTH gntR-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00307"
FT DNA_BIND 38..57
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00307"
FT CONFLICT 1..22
FT /note="MTVETQLNPTQPVNQQIYRILR -> MYSILS (in Ref. 1)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 228 AA; 26565 MW; 8CFF8EB3BCF9AF84 CRC64;
MTVETQLNPT QPVNQQIYRI LRRDIVHCLI APGTPLSEKE VSVRFNVSRQ PVREAFIKLA
ENGLIQIRPQ RGSYVNKISM AQVRNGSFIR QAIECAVARR AASMITESQC YQLEQNLHQQ
RIAIERKQLD DFFELDDNFH QLLTQIADCQ LAWDTIENLK ATVDRVRYMS FDHVSPPEML
LRQHLDIFSA LQKRDGDAVE RAMTQHLQEI SESVRQIRQE NSDWFSEE
