YDFK_ECOLI
ID YDFK_ECOLI Reviewed; 77 AA.
AC P76154; Q2MB92;
DT 15-JUL-1998, integrated into UniProtKB/Swiss-Prot.
DT 19-OCT-2011, sequence version 2.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Cold shock protein YdfK;
GN Name=ydfK; OrderedLocusNames=b1544, JW1537;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [3]
RP INDUCTION.
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=14527658; DOI=10.1016/s0923-2508(03)00167-0;
RA Polissi A., De Laurentis W., Zangrossi S., Briani F., Longhi V., Pesole G.,
RA Deho G.;
RT "Changes in Escherichia coli transcriptome during acclimatization at low
RT temperature.";
RL Res. Microbiol. 154:573-580(2003).
RN [4]
RP INDUCTION, AND IDENTIFICATION OF PROBABLE TRANSLATIONAL START.
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=21460078; DOI=10.1128/jb.00398-11;
RA Raghavan R., Sage A., Ochman H.;
RT "Genome-wide identification of transcription start sites yields a novel
RT thermosensing RNA and new cyclic AMP receptor protein-regulated genes in
RT Escherichia coli.";
RL J. Bacteriol. 193:2871-2874(2011).
CC -!- INDUCTION: By cold shock, up to 70-fold at 10 degrees Celsius.
CC {ECO:0000269|PubMed:14527658, ECO:0000269|PubMed:21460078}.
CC -!- SIMILARITY: To E.coli YnaE. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAE76464.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};
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DR EMBL; U00096; AAC74617.2; -; Genomic_DNA.
DR EMBL; AP009048; BAE76464.1; ALT_INIT; Genomic_DNA.
DR PIR; C64909; C64909.
DR RefSeq; NP_416062.2; NC_000913.3.
DR RefSeq; WP_000836768.1; NZ_SSUU01000015.1.
DR AlphaFoldDB; P76154; -.
DR SMR; P76154; -.
DR IntAct; P76154; 22.
DR STRING; 511145.b1544; -.
DR PaxDb; P76154; -.
DR PRIDE; P76154; -.
DR EnsemblBacteria; AAC74617; AAC74617; b1544.
DR EnsemblBacteria; BAE76464; BAE76464; BAE76464.
DR GeneID; 67414593; -.
DR GeneID; 947451; -.
DR KEGG; ecj:JW1537; -.
DR KEGG; eco:b1544; -.
DR PATRIC; fig|511145.12.peg.1614; -.
DR EchoBASE; EB3584; -.
DR eggNOG; ENOG503303D; Bacteria.
DR HOGENOM; CLU_2367798_0_0_6; -.
DR BioCyc; EcoCyc:G6818-MON; -.
DR PRO; PR:P76154; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0009409; P:response to cold; IEP:EcoCyc.
PE 2: Evidence at transcript level;
KW Reference proteome.
FT CHAIN 1..77
FT /note="Cold shock protein YdfK"
FT /id="PRO_0000168957"
SQ SEQUENCE 77 AA; 8778 MW; 8EC1C53E6C130407 CRC64;
MKSKDTLKWF PAQLPEVRII LGDAVVEVAK QGRPINTRTL LDYIEGNIKK KSWLDNKELL
QTAISVLKDN QNLNGKM