YDGA_ECOLI
ID YDGA_ECOLI Reviewed; 502 AA.
AC P77804; Q47707;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-1997, sequence version 1.
DT 03-AUG-2022, entry version 150.
DE RecName: Full=Protein YdgA;
DE Flags: Precursor;
GN Name=ydgA; OrderedLocusNames=b1614, JW1606;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=K12;
RA Liang W.J., Wilson K.J., Jefferson R.A.;
RT "The gus genes of Escherichia coli.";
RL Submitted (OCT-1994) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=9097039; DOI=10.1093/dnares/3.6.363;
RA Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K., Itoh T.,
RA Kasai H., Kashimoto K., Kimura S., Kitakawa M., Kitagawa M., Makino K.,
RA Miki T., Mizobuchi K., Mori H., Mori T., Motomura K., Nakade S.,
RA Nakamura Y., Nashimoto H., Nishio Y., Oshima T., Saito N., Sampei G.,
RA Seki Y., Sivasundaram S., Tagami H., Takeda J., Takemoto K., Takeuchi Y.,
RA Wada C., Yamamoto Y., Horiuchi T.;
RT "A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT the 28.0-40.1 min region on the linkage map.";
RL DNA Res. 3:363-377(1996).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [5]
RP IDENTIFICATION BY MASS SPECTROMETRY, SUBUNIT, AND SUBCELLULAR LOCATION.
RC STRAIN=BL21-DE3;
RX PubMed=16079137; DOI=10.1074/jbc.m506479200;
RA Stenberg F., Chovanec P., Maslen S.L., Robinson C.V., Ilag L.,
RA von Heijne G., Daley D.O.;
RT "Protein complexes of the Escherichia coli cell envelope.";
RL J. Biol. Chem. 280:34409-34419(2005).
CC -!- SUBUNIT: Homodimer. {ECO:0000269|PubMed:16079137}.
CC -!- INTERACTION:
CC P77804; P77804: ydgA; NbExp=2; IntAct=EBI-552466, EBI-552466;
CC -!- SUBCELLULAR LOCATION: Cell inner membrane
CC {ECO:0000269|PubMed:16079137}; Peripheral membrane protein
CC {ECO:0000269|PubMed:16079137}; Periplasmic side
CC {ECO:0000269|PubMed:16079137}. Note=Has been isolated in association
CC with the inner membrane, suggesting it may be tethered to the membrane.
CC -!- SIMILARITY: To E.coli YihF and H.influenzae HI_1236. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAA68926.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; M14641; AAA68926.1; ALT_FRAME; Genomic_DNA.
DR EMBL; U00096; AAC74686.1; -; Genomic_DNA.
DR EMBL; AP009048; BAA15362.1; -; Genomic_DNA.
DR PIR; H64917; H64917.
DR RefSeq; NP_416131.1; NC_000913.3.
DR RefSeq; WP_001043339.1; NZ_SSZK01000001.1.
DR AlphaFoldDB; P77804; -.
DR BioGRID; 4260256; 117.
DR DIP; DIP-11709N; -.
DR IntAct; P77804; 11.
DR STRING; 511145.b1614; -.
DR jPOST; P77804; -.
DR PaxDb; P77804; -.
DR PRIDE; P77804; -.
DR EnsemblBacteria; AAC74686; AAC74686; b1614.
DR EnsemblBacteria; BAA15362; BAA15362; BAA15362.
DR GeneID; 946172; -.
DR KEGG; ecj:JW1606; -.
DR KEGG; eco:b1614; -.
DR PATRIC; fig|511145.12.peg.1685; -.
DR EchoBASE; EB2351; -.
DR eggNOG; COG5339; Bacteria.
DR HOGENOM; CLU_029683_2_0_6; -.
DR OMA; QYANGQV; -.
DR PhylomeDB; P77804; -.
DR BioCyc; EcoCyc:G6865-MON; -.
DR PRO; PR:P77804; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0042802; F:identical protein binding; IPI:IntAct.
DR GO; GO:0071978; P:bacterial-type flagellum-dependent swarming motility; IMP:EcoCyc.
DR InterPro; IPR010352; DUF945.
DR Pfam; PF06097; DUF945; 1.
PE 1: Evidence at protein level;
KW Cell inner membrane; Cell membrane; Membrane; Reference proteome; Signal.
FT SIGNAL 1..19
FT /evidence="ECO:0000255"
FT CHAIN 20..502
FT /note="Protein YdgA"
FT /id="PRO_0000042627"
FT CONFLICT 186..198
FT /note="GKAISLSGEAQSG -> AKPSPFPGRRKVV (in Ref. 1)"
FT /evidence="ECO:0000305"
FT CONFLICT 322..323
FT /note="LA -> SR (in Ref. 1; AAA68926)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 502 AA; 54689 MW; D061576FA5DBAC4C CRC64;
MNKSLVAVGV IVALGVVWTG GAWYTGKKIE THLEDMVAQA NAQLKLTAPE SNLEVSYQNY
HRGVFSSQLQ LLVKPIAGKE NPWIKSGQSV IFNESVDHGP FPLAQLKKLN LIPSMASIQT
TLVNNEVSKP LFDMAKGETP FEINSRIGYS GDSSSDISLK PLNYEQKDEK VAFSGGEFQL
NADRDGKAIS LSGEAQSGRI DAVNEYNQKV QLTFNNLKTD GSSTLASFGE RVGNQKLSLE
KMTISVEGKE LALLEGMEIS GKSDLVNDGK TINSQLDYSL NSLKVQNQDL GSGKLTLKVG
QIDGEAWHQF SQQYNAQTQA LLAQPEIANN PELYQEKVTE AFFSALPLML KGDPVITIAP
LSWKNSQGES ALNLSLFLKD PATTKEAPQT LAQEVDRSVK SLDAKLTIPV DMATEFMTQV
AKLEGYQEDQ AKKLAKQQVE GASAMGQMFR LTTLQDNTIT TSLQYANGQI TLNGQKMSLE
DFVGMFAMPA LNVPAVPAIP QQ
