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YDHX_ECOLI
ID   YDHX_ECOLI              Reviewed;         222 AA.
AC   P77375;
DT   05-MAR-2002, integrated into UniProtKB/Swiss-Prot.
DT   24-NOV-2009, sequence version 4.
DT   03-AUG-2022, entry version 146.
DE   RecName: Full=Uncharacterized ferredoxin-like protein YdhX;
DE   Flags: Precursor;
GN   Name=ydhX; OrderedLocusNames=b1671, JW5271;
OS   Escherichia coli (strain K12).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Enterobacteriaceae; Escherichia.
OX   NCBI_TaxID=83333;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX   PubMed=9097040; DOI=10.1093/dnares/3.6.379;
RA   Itoh T., Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K.,
RA   Kasai H., Kimura S., Kitakawa M., Kitagawa M., Makino K., Miki T.,
RA   Mizobuchi K., Mori H., Mori T., Motomura K., Nakade S., Nakamura Y.,
RA   Nashimoto H., Nishio Y., Oshima T., Saito N., Sampei G., Seki Y.,
RA   Sivasundaram S., Tagami H., Takeda J., Takemoto K., Wada C., Yamamoto Y.,
RA   Horiuchi T.;
RT   "A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT   the 40.1-50.0 min region on the linkage map.";
RL   DNA Res. 3:379-392(1996).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / MG1655 / ATCC 47076;
RX   PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA   Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA   Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA   Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA   Shao Y.;
RT   "The complete genome sequence of Escherichia coli K-12.";
RL   Science 277:1453-1462(1997).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX   PubMed=16738553; DOI=10.1038/msb4100049;
RA   Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA   Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT   "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT   and W3110.";
RL   Mol. Syst. Biol. 2:E1-E5(2006).
RN   [4]
RP   EXPORT VIA THE TAT-SYSTEM AND THE SEC-SYSTEM.
RX   PubMed=17218314; DOI=10.1074/jbc.m610507200;
RA   Tullman-Ercek D., DeLisa M.P., Kawarasaki Y., Iranpour P., Ribnicky B.,
RA   Palmer T., Georgiou G.;
RT   "Export pathway selectivity of Escherichia coli twin arginine translocation
RT   signal peptides.";
RL   J. Biol. Chem. 282:8309-8316(2007).
RN   [5]
RP   INDUCTION.
RC   STRAIN=K12;
RX   PubMed=18227264; DOI=10.1099/mic.0.2007/012146-0;
RA   Partridge J.D., Browning D.F., Xu M., Newnham L.J., Scott C., Roberts R.E.,
RA   Poole R.K., Green J.;
RT   "Characterization of the Escherichia coli K-12 ydhYVWXUT operon: regulation
RT   by FNR, NarL and NarP.";
RL   Microbiology 154:608-618(2008).
CC   -!- INDUCTION: Up-regulated by the oxygen-responsive transcription factor
CC       FNR under anaerobic conditions. Repressed in the presence of nitrate or
CC       nitrite via the two-component systems NarXL and NarPQ, respectively.
CC       {ECO:0000269|PubMed:18227264}.
CC   -!- PTM: Exported by the Tat system. The position of the signal peptide
CC       cleavage has not been experimentally proven. Can also be exported by
CC       the Sec system.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAB47947.1; Type=Erroneous initiation; Evidence={ECO:0000305};
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DR   EMBL; U00096; AAC74741.4; -; Genomic_DNA.
DR   EMBL; U68703; AAB47947.1; ALT_INIT; Genomic_DNA.
DR   EMBL; AP009048; BAA15443.2; -; Genomic_DNA.
DR   PIR; G64924; G64924.
DR   RefSeq; NP_416186.4; NC_000913.3.
DR   RefSeq; WP_001310861.1; NZ_STEB01000003.1.
DR   AlphaFoldDB; P77375; -.
DR   SMR; P77375; -.
DR   BioGRID; 4263343; 13.
DR   DIP; DIP-48159N; -.
DR   STRING; 511145.b1671; -.
DR   PaxDb; P77375; -.
DR   PRIDE; P77375; -.
DR   EnsemblBacteria; AAC74741; AAC74741; b1671.
DR   EnsemblBacteria; BAA15443; BAA15443; BAA15443.
DR   GeneID; 66674436; -.
DR   GeneID; 947308; -.
DR   KEGG; ecj:JW5271; -.
DR   KEGG; eco:b1671; -.
DR   PATRIC; fig|1411691.4.peg.588; -.
DR   EchoBASE; EB3716; -.
DR   eggNOG; COG0437; Bacteria.
DR   HOGENOM; CLU_043374_1_3_6; -.
DR   InParanoid; P77375; -.
DR   OMA; EKCTWCY; -.
DR   PhylomeDB; P77375; -.
DR   BioCyc; EcoCyc:G6899-MON; -.
DR   PRO; PR:P77375; -.
DR   Proteomes; UP000000318; Chromosome.
DR   Proteomes; UP000000625; Chromosome.
DR   GO; GO:0030288; C:outer membrane-bounded periplasmic space; IDA:EcoCyc.
DR   GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   InterPro; IPR017896; 4Fe4S_Fe-S-bd.
DR   InterPro; IPR017900; 4Fe4S_Fe_S_CS.
DR   Pfam; PF13247; Fer4_11; 1.
DR   PROSITE; PS00198; 4FE4S_FER_1; 1.
DR   PROSITE; PS51379; 4FE4S_FER_2; 3.
PE   2: Evidence at transcript level;
KW   4Fe-4S; Iron; Iron-sulfur; Metal-binding; Reference proteome; Repeat;
KW   Signal.
FT   SIGNAL          1..27
FT                   /note="Tat-type signal"
FT                   /evidence="ECO:0000255"
FT   CHAIN           28..222
FT                   /note="Uncharacterized ferredoxin-like protein YdhX"
FT                   /id="PRO_0000159295"
FT   DOMAIN          37..67
FT                   /note="4Fe-4S ferredoxin-type 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00711"
FT   DOMAIN          83..114
FT                   /note="4Fe-4S ferredoxin-type 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00711"
FT   DOMAIN          115..144
FT                   /note="4Fe-4S ferredoxin-type 3"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00711"
FT   BINDING         46
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000250"
FT   BINDING         49
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000250"
FT   BINDING         52
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000250"
FT   BINDING         56
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000250"
FT   BINDING         92
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_label="3"
FT                   /evidence="ECO:0000250"
FT   BINDING         95
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_label="3"
FT                   /evidence="ECO:0000250"
FT   BINDING         100
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_label="3"
FT                   /evidence="ECO:0000250"
FT   BINDING         104
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_label="4"
FT                   /evidence="ECO:0000250"
FT   BINDING         124
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_label="4"
FT                   /evidence="ECO:0000250"
FT   BINDING         127
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_label="4"
FT                   /evidence="ECO:0000250"
FT   BINDING         130
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_label="4"
FT                   /evidence="ECO:0000250"
FT   BINDING         134
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_label="3"
FT                   /evidence="ECO:0000250"
FT   BINDING         151
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000250"
FT   BINDING         154
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000250"
FT   BINDING         167
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_label="2"
FT                   /evidence="ECO:0000250"
FT   BINDING         171
FT                   /ligand="[4Fe-4S] cluster"
FT                   /ligand_id="ChEBI:CHEBI:49883"
FT                   /ligand_label="1"
FT                   /evidence="ECO:0000250"
SQ   SEQUENCE   222 AA;  25093 MW;  95FE1FC3687E6E0D CRC64;
     MSFTRRKFVL GMGTVIFFTG SASSLLANTR QEKEVRYAMI HDESRCNGCN ICARACRKTN
     HVPAQGSRLS IAHIPVTDND NETQYHFFRQ SCQHCEDAPC IDVCPTGASW RDEQGIVRVE
     KSQCIGCSYC IGACPYQVRY LNPVTKVADK CDFCAESRLA KGFPPICVSA CPEHALIFGR
     EDSPEIQAWL QQNKYYQYQL PGAGKPHLYR RFGQHLIKKE NV
 
 
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