YDIP_ECOLI
ID YDIP_ECOLI Reviewed; 303 AA.
AC P77402;
DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-1997, sequence version 1.
DT 03-AUG-2022, entry version 159.
DE RecName: Full=Uncharacterized HTH-type transcriptional regulator YdiP;
GN Name=ydiP; OrderedLocusNames=b1696, JW1686;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=9097039; DOI=10.1093/dnares/3.6.363;
RA Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K., Itoh T.,
RA Kasai H., Kashimoto K., Kimura S., Kitakawa M., Kitagawa M., Makino K.,
RA Miki T., Mizobuchi K., Mori H., Mori T., Motomura K., Nakade S.,
RA Nakamura Y., Nashimoto H., Nishio Y., Oshima T., Saito N., Sampei G.,
RA Seki Y., Sivasundaram S., Tagami H., Takeda J., Takemoto K., Takeuchi Y.,
RA Wada C., Yamamoto Y., Horiuchi T.;
RT "A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT the 28.0-40.1 min region on the linkage map.";
RL DNA Res. 3:363-377(1996).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
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DR EMBL; U00096; AAC74766.1; -; Genomic_DNA.
DR EMBL; AP009048; BAA15465.1; -; Genomic_DNA.
DR PIR; H64927; H64927.
DR RefSeq; NP_416211.1; NC_000913.3.
DR RefSeq; WP_000284799.1; NZ_STEB01000003.1.
DR AlphaFoldDB; P77402; -.
DR SMR; P77402; -.
DR BioGRID; 4260292; 16.
DR DIP; DIP-11757N; -.
DR IntAct; P77402; 1.
DR STRING; 511145.b1696; -.
DR PaxDb; P77402; -.
DR PRIDE; P77402; -.
DR EnsemblBacteria; AAC74766; AAC74766; b1696.
DR EnsemblBacteria; BAA15465; BAA15465; BAA15465.
DR GeneID; 945095; -.
DR KEGG; ecj:JW1686; -.
DR KEGG; eco:b1696; -.
DR PATRIC; fig|1411691.4.peg.562; -.
DR EchoBASE; EB3732; -.
DR eggNOG; COG1917; Bacteria.
DR eggNOG; COG2207; Bacteria.
DR HOGENOM; CLU_000445_88_6_6; -.
DR InParanoid; P77402; -.
DR OMA; YDFERFA; -.
DR PhylomeDB; P77402; -.
DR BioCyc; EcoCyc:G6919-MON; -.
DR PRO; PR:P77402; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR Gene3D; 2.60.120.10; -; 1.
DR InterPro; IPR003313; AraC-bd.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR018060; HTH_AraC.
DR InterPro; IPR014710; RmlC-like_jellyroll.
DR InterPro; IPR011051; RmlC_Cupin_sf.
DR Pfam; PF02311; AraC_binding; 1.
DR Pfam; PF12833; HTH_18; 1.
DR SMART; SM00342; HTH_ARAC; 1.
DR SUPFAM; SSF46689; SSF46689; 2.
DR SUPFAM; SSF51182; SSF51182; 1.
DR PROSITE; PS01124; HTH_ARAC_FAMILY_2; 1.
PE 4: Predicted;
KW DNA-binding; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..303
FT /note="Uncharacterized HTH-type transcriptional regulator
FT YdiP"
FT /id="PRO_0000194610"
FT DOMAIN 183..281
FT /note="HTH araC/xylS-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00593"
FT DNA_BIND 200..221
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00593"
FT DNA_BIND 248..271
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00593"
SQ SEQUENCE 303 AA; 34894 MW; EABEFFEA720ED137 CRC64;
MYQRCFDNAS ETLFVAGKTP RLSRFAFSDD PKWESGHHVH DNETELIYVK KGVARFTIDS
SLYVAHADDI VVIERGRLHA VASDVNDPAT TCTCALYGFQ FQGAEENQLL QPHSCPVIAA
GQGKEVIKTL FNELSVILPQ SKNSQTSSLW DAFAYTLAIL YYENFKNAYR SEQGYIKKDV
LIKDILFYLN NNYREKITLE QLSKKFRASV SYICHEFTKE YRISPINYVI QRRMTEAKWS
LTNTELSQAE ISWRVGYENV DHFAKLFLRH VGCSPSDYRR QFKNCFAEQE ILSEFPQPVS
LVG
