YDJZ_ECOLI
ID YDJZ_ECOLI Reviewed; 235 AA.
AC P76221; Q2MB37;
DT 01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-1997, sequence version 1.
DT 03-AUG-2022, entry version 129.
DE RecName: Full=TVP38/TMEM64 family inner membrane protein YdjZ;
GN Name=ydjZ; OrderedLocusNames=b1752, JW1741;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [3]
RP TOPOLOGY [LARGE SCALE ANALYSIS].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=15919996; DOI=10.1126/science.1109730;
RA Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.;
RT "Global topology analysis of the Escherichia coli inner membrane
RT proteome.";
RL Science 308:1321-1323(2005).
RN [4]
RP REGION VTT DOMAIN.
RX PubMed=30093494; DOI=10.1083/jcb.201804132;
RA Morita K., Hama Y., Izume T., Tamura N., Ueno T., Yamashita Y.,
RA Sakamaki Y., Mimura K., Morishita H., Shihoya W., Nureki O., Mano H.,
RA Mizushima N.;
RT "Genome-wide CRISPR screen identifies TMEM41B as a gene required for
RT autophagosome formation.";
RL J. Cell Biol. 217:3817-3828(2018).
CC -!- SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane protein.
CC -!- DOMAIN: The VTT domain was previously called the SNARE-assoc domain. As
CC there is no evidence that this domain associates with SNARE proteins,
CC it was renamed as VMP1, TMEM41, and TVP38 (VTT) domain.
CC {ECO:0000305|PubMed:30093494}.
CC -!- SIMILARITY: Belongs to the TVP38/TMEM64 family. {ECO:0000305}.
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DR EMBL; U00096; AAC74822.1; -; Genomic_DNA.
DR EMBL; AP009048; BAE76519.1; -; Genomic_DNA.
DR PIR; H64934; H64934.
DR RefSeq; NP_416266.1; NC_000913.3.
DR RefSeq; WP_000980098.1; NZ_SSZK01000001.1.
DR AlphaFoldDB; P76221; -.
DR BioGRID; 4259418; 9.
DR STRING; 511145.b1752; -.
DR TCDB; 9.B.27.1.2; the death effector domain a (deda) family.
DR PaxDb; P76221; -.
DR PRIDE; P76221; -.
DR DNASU; 946269; -.
DR EnsemblBacteria; AAC74822; AAC74822; b1752.
DR EnsemblBacteria; BAE76519; BAE76519; BAE76519.
DR GeneID; 946269; -.
DR KEGG; ecj:JW1741; -.
DR KEGG; eco:b1752; -.
DR PATRIC; fig|1411691.4.peg.503; -.
DR EchoBASE; EB3758; -.
DR eggNOG; COG0398; Bacteria.
DR HOGENOM; CLU_038944_8_0_6; -.
DR InParanoid; P76221; -.
DR OMA; WVERHGF; -.
DR PhylomeDB; P76221; -.
DR BioCyc; EcoCyc:G6947-MON; -.
DR PRO; PR:P76221; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IBA:GO_Central.
DR GO; GO:0005886; C:plasma membrane; IDA:EcoCyc.
DR InterPro; IPR032816; SNARE_assoc.
DR InterPro; IPR015414; TMEM64.
DR PANTHER; PTHR12677; PTHR12677; 1.
DR Pfam; PF09335; SNARE_assoc; 1.
PE 1: Evidence at protein level;
KW Cell inner membrane; Cell membrane; Membrane; Reference proteome;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..235
FT /note="TVP38/TMEM64 family inner membrane protein YdjZ"
FT /id="PRO_0000198634"
FT TOPO_DOM 1..13
FT /note="Periplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 14..34
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 35..64
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 65..85
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 86..95
FT /note="Periplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 96..116
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 117..176
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 177..197
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 198..202
FT /note="Periplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 203..223
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 224..235
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT REGION 90..199
FT /note="VTT domain"
FT /evidence="ECO:0000305|PubMed:30093494"
SQ SEQUENCE 235 AA; 26160 MW; 8B025135FDC66DDD CRC64;
MMMMQSRKIW YYRITLIILL FAMLLAWALL PGVHEFINRS VAAFAAVDQQ GIERFIQSYG
ALAAVVSFLL MILQAIAAPL PAFLITFANA SLFGAFWGGL LSWTSSMAGA ALCFFIARVM
GREVVEKLTG KTVLDSMDGF FTRYGKHTIL VCRLLPFVPF DPISYAAGLT SIRFRSFFIA
TGLGQLPATI VYSWAGSMLT GGTFWFVTGL FILFALTVVI FMAKKIWLER QKRNA