YEBC_ECOLI
ID YEBC_ECOLI Reviewed; 246 AA.
AC P0A8A0; P24237;
DT 07-JUN-2005, integrated into UniProtKB/Swiss-Prot.
DT 07-JUN-2005, sequence version 1.
DT 03-AUG-2022, entry version 123.
DE RecName: Full=Probable transcriptional regulatory protein YebC {ECO:0000255|HAMAP-Rule:MF_00693};
GN Name=yebC {ECO:0000255|HAMAP-Rule:MF_00693};
GN OrderedLocusNames=b1864, JW1853;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=1885548; DOI=10.1128/jb.173.18.5747-5753.1991;
RA Takahagi M., Iwasaki H., Nakata A., Shinagawa H.;
RT "Molecular analysis of the Escherichia coli ruvC gene, which encodes a
RT Holliday junction-specific endonuclease.";
RL J. Bacteriol. 173:5747-5753(1991).
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX PubMed=1657895; DOI=10.1128/jb.173.23.7711-7715.1991;
RA Sharples G.J., Lloyd R.G.;
RT "Resolution of Holliday junctions in Escherichia coli: identification of
RT the ruvC gene product as a 19-kilodalton protein.";
RL J. Bacteriol. 173:7711-7715(1991).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=9097040; DOI=10.1093/dnares/3.6.379;
RA Itoh T., Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K.,
RA Kasai H., Kimura S., Kitakawa M., Kitagawa M., Makino K., Miki T.,
RA Mizobuchi K., Mori H., Mori T., Motomura K., Nakade S., Nakamura Y.,
RA Nashimoto H., Nishio Y., Oshima T., Saito N., Sampei G., Seki Y.,
RA Sivasundaram S., Tagami H., Takeda J., Takemoto K., Wada C., Yamamoto Y.,
RA Horiuchi T.;
RT "A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT the 40.1-50.0 min region on the linkage map.";
RL DNA Res. 3:379-392(1996).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [6]
RP IDENTIFICATION BY MASS SPECTROMETRY.
RC STRAIN=B / BL21;
RX PubMed=10493123;
RX DOI=10.1002/(sici)1522-2683(19990801)20:11<2181::aid-elps2181>3.0.co;2-q;
RA Fountoulakis M., Takacs M.-F., Berndt P., Langen H., Takacs B.;
RT "Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite
RT chromatography.";
RL Electrophoresis 20:2181-2195(1999).
RN [7]
RP X-RAY CRYSTALLOGRAPHY (2.2 ANGSTROMS).
RA Jia J., Smith C., Lunin V.V., Matte A., Cygler M.;
RL Submitted (DEC-2001) to the PDB data bank.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00693}.
CC -!- SIMILARITY: Belongs to the TACO1 family. {ECO:0000255|HAMAP-
CC Rule:MF_00693}.
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DR EMBL; D10165; BAA01031.1; -; Genomic_DNA.
DR EMBL; X59551; CAA42126.1; -; Genomic_DNA.
DR EMBL; U00096; AAC74934.1; -; Genomic_DNA.
DR EMBL; AP009048; BAA15675.1; -; Genomic_DNA.
DR PIR; C38113; C38113.
DR RefSeq; NP_416378.1; NC_000913.3.
DR RefSeq; WP_000907248.1; NZ_STEB01000009.1.
DR PDB; 1KON; X-ray; 2.20 A; A=1-246.
DR PDBsum; 1KON; -.
DR AlphaFoldDB; P0A8A0; -.
DR SMR; P0A8A0; -.
DR BioGRID; 4261689; 103.
DR BioGRID; 850736; 4.
DR DIP; DIP-47886N; -.
DR IntAct; P0A8A0; 22.
DR STRING; 511145.b1864; -.
DR jPOST; P0A8A0; -.
DR PaxDb; P0A8A0; -.
DR PRIDE; P0A8A0; -.
DR EnsemblBacteria; AAC74934; AAC74934; b1864.
DR EnsemblBacteria; BAA15675; BAA15675; BAA15675.
DR GeneID; 58389837; -.
DR GeneID; 946379; -.
DR KEGG; ecj:JW1853; -.
DR KEGG; eco:b1864; -.
DR PATRIC; fig|511145.12.peg.1943; -.
DR EchoBASE; EB1127; -.
DR eggNOG; COG0217; Bacteria.
DR HOGENOM; CLU_062974_2_2_6; -.
DR InParanoid; P0A8A0; -.
DR OMA; ETIMYEG; -.
DR PhylomeDB; P0A8A0; -.
DR BioCyc; EcoCyc:EG11137-MON; -.
DR EvolutionaryTrace; P0A8A0; -.
DR PRO; PR:P0A8A0; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0005829; C:cytosol; IDA:EcoCyc.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:UniProtKB-UniRule.
DR GO; GO:0010212; P:response to ionizing radiation; IMP:EcoCyc.
DR Gene3D; 1.10.10.200; -; 1.
DR Gene3D; 3.30.70.980; -; 2.
DR HAMAP; MF_00693; Transcrip_reg_TACO1; 1.
DR InterPro; IPR017856; Integrase-like_N.
DR InterPro; IPR002876; Transcrip_reg_TACO1-like.
DR InterPro; IPR026564; Transcrip_reg_TACO1-like_dom3.
DR InterPro; IPR029072; YebC-like.
DR PANTHER; PTHR12532; PTHR12532; 1.
DR Pfam; PF01709; Transcrip_reg; 1.
DR SUPFAM; SSF75625; SSF75625; 1.
DR TIGRFAMs; TIGR01033; TIGR01033; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Cytoplasm; DNA-binding; Reference proteome; Transcription;
KW Transcription regulation.
FT CHAIN 1..246
FT /note="Probable transcriptional regulatory protein YebC"
FT /id="PRO_0000175799"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT HELIX 7..9
FT /evidence="ECO:0007829|PDB:1KON"
FT STRAND 11..13
FT /evidence="ECO:0007829|PDB:1KON"
FT TURN 14..18
FT /evidence="ECO:0007829|PDB:1KON"
FT HELIX 21..37
FT /evidence="ECO:0007829|PDB:1KON"
FT HELIX 50..58
FT /evidence="ECO:0007829|PDB:1KON"
FT HELIX 63..70
FT /evidence="ECO:0007829|PDB:1KON"
FT STRAND 83..91
FT /evidence="ECO:0007829|PDB:1KON"
FT TURN 92..94
FT /evidence="ECO:0007829|PDB:1KON"
FT STRAND 95..104
FT /evidence="ECO:0007829|PDB:1KON"
FT HELIX 106..118
FT /evidence="ECO:0007829|PDB:1KON"
FT TURN 119..121
FT /evidence="ECO:0007829|PDB:1KON"
FT HELIX 131..133
FT /evidence="ECO:0007829|PDB:1KON"
FT STRAND 134..145
FT /evidence="ECO:0007829|PDB:1KON"
FT HELIX 147..157
FT /evidence="ECO:0007829|PDB:1KON"
FT STRAND 160..164
FT /evidence="ECO:0007829|PDB:1KON"
FT STRAND 170..175
FT /evidence="ECO:0007829|PDB:1KON"
FT HELIX 176..178
FT /evidence="ECO:0007829|PDB:1KON"
FT HELIX 179..188
FT /evidence="ECO:0007829|PDB:1KON"
FT STRAND 194..204
FT /evidence="ECO:0007829|PDB:1KON"
FT TURN 210..212
FT /evidence="ECO:0007829|PDB:1KON"
FT HELIX 214..225
FT /evidence="ECO:0007829|PDB:1KON"
FT STRAND 226..234
FT /evidence="ECO:0007829|PDB:1KON"
FT HELIX 240..243
FT /evidence="ECO:0007829|PDB:1KON"
SQ SEQUENCE 246 AA; 26423 MW; F02F71E7DAF39C18 CRC64;
MAGHSKWANT RHRKAAQDAK RGKIFTKIIR ELVTAAKLGG GDPDANPRLR AAVDKALSNN
MTRDTLNRAI ARGVGGDDDA NMETIIYEGY GPGGTAIMIE CLSDNRNRTV AEVRHAFSKC
GGNLGTDGSV AYLFSKKGVI SFEKGDEDTI MEAALEAGAE DVVTYDDGAI DVYTAWEEMG
KVRDALEAAG LKADSAEVSM IPSTKADMDA ETAPKLMRLI DMLEDCDDVQ EVYHNGEISD
EVAATL
