YEDI_ECOLI
ID YEDI_ECOLI Reviewed; 305 AA.
AC P46125; P76332;
DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1997, sequence version 2.
DT 03-AUG-2022, entry version 126.
DE RecName: Full=Inner membrane protein YedI;
GN Name=yedI; OrderedLocusNames=b1958, JW1941;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=9097040; DOI=10.1093/dnares/3.6.379;
RA Itoh T., Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K.,
RA Kasai H., Kimura S., Kitakawa M., Kitagawa M., Makino K., Miki T.,
RA Mizobuchi K., Mori H., Mori T., Motomura K., Nakade S., Nakamura Y.,
RA Nashimoto H., Nishio Y., Oshima T., Saito N., Sampei G., Seki Y.,
RA Sivasundaram S., Tagami H., Takeda J., Takemoto K., Wada C., Yamamoto Y.,
RA Horiuchi T.;
RT "A 460-kb DNA sequence of the Escherichia coli K-12 genome corresponding to
RT the 40.1-50.0 min region on the linkage map.";
RL DNA Res. 3:379-392(1996).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [4]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 1-136.
RC STRAIN=K12;
RX PubMed=2527357; DOI=10.1093/nar/17.14.5844;
RA Hanck T., Gerwin N., Fritz H.-J.;
RT "Nucleotide sequence of the dcm locus of Escherichia coli K12.";
RL Nucleic Acids Res. 17:5844-5844(1989).
RN [5]
RP IDENTIFICATION.
RX PubMed=7567469; DOI=10.1093/nar/23.17.3554;
RA Borodovsky M., McIninch J., Koonin E.V., Rudd K.E., Medigue C., Danchin A.;
RT "Detection of new genes in a bacterial genome using Markov models for three
RT gene classes.";
RL Nucleic Acids Res. 23:3554-3562(1995).
RN [6]
RP TOPOLOGY [LARGE SCALE ANALYSIS].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=15919996; DOI=10.1126/science.1109730;
RA Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.;
RT "Global topology analysis of the Escherichia coli inner membrane
RT proteome.";
RL Science 308:1321-1323(2005).
CC -!- SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane protein.
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DR EMBL; U00096; AAC75024.1; -; Genomic_DNA.
DR EMBL; AP009048; BAA15785.1; -; Genomic_DNA.
DR EMBL; X13330; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR PIR; B64960; B64960.
DR RefSeq; NP_416467.1; NC_000913.3.
DR RefSeq; WP_000922686.1; NZ_LN832404.1.
DR AlphaFoldDB; P46125; -.
DR BioGRID; 4261054; 24.
DR IntAct; P46125; 2.
DR STRING; 511145.b1958; -.
DR jPOST; P46125; -.
DR PaxDb; P46125; -.
DR PRIDE; P46125; -.
DR DNASU; 946465; -.
DR EnsemblBacteria; AAC75024; AAC75024; b1958.
DR EnsemblBacteria; BAA15785; BAA15785; BAA15785.
DR GeneID; 946465; -.
DR KEGG; ecj:JW1941; -.
DR KEGG; eco:b1958; -.
DR PATRIC; fig|1411691.4.peg.294; -.
DR EchoBASE; EB2571; -.
DR eggNOG; COG2354; Bacteria.
DR HOGENOM; CLU_059391_0_0_6; -.
DR InParanoid; P46125; -.
DR OMA; LWAITKG; -.
DR PhylomeDB; P46125; -.
DR BioCyc; EcoCyc:EG12709-MON; -.
DR PRO; PR:P46125; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IDA:EcoCyc.
DR InterPro; IPR008526; YedI.
DR PANTHER; PTHR30503; PTHR30503; 1.
DR Pfam; PF05661; DUF808; 1.
DR PIRSF; PIRSF016660; YedI; 1.
PE 1: Evidence at protein level;
KW Cell inner membrane; Cell membrane; Membrane; Reference proteome;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..305
FT /note="Inner membrane protein YedI"
FT /id="PRO_0000169092"
FT TOPO_DOM 1..71
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 72..92
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 93..113
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 114..151
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 152..172
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 173..176
FT /note="Periplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 177..197
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 198..231
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 232..252
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 253..271
FT /note="Periplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 272..292
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 293..305
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
SQ SEQUENCE 305 AA; 32191 MW; 924454A053A8CEB3 CRC64;
MLLAGSSLLT LLDDIATLLD DISVMGKLAA KKTAGVLGDD LSLNAQQVSG VRANRELPVV
WGVAKGSLIN KVILVPLALI ISAFIPWAIT PLLMIGGAFL CFEGVEKVLH MLEARKHKED
PAQSQQRLEK LAAQDPLKFE KDKIKGAIRT DFILSAEIVA ITLGIVAEAP LLNQVLVLSG
IALVVTVGVY GLVGVIVKID DLGYWLAEKS SALMQALGKG LLIIAPWLMK ALSIVGTLAM
FLVGGGIVVH GIAPLHHAIE HFAGQQSAVV AMILPTVLNL ILGFIIGGIV VLGVKAVEKM
RGQAH
