YFBU_ECOLI
ID YFBU_ECOLI Reviewed; 164 AA.
AC P0A8W8; P76492; Q2MAM1;
DT 07-JUN-2005, integrated into UniProtKB/Swiss-Prot.
DT 07-JUN-2005, sequence version 1.
DT 03-AUG-2022, entry version 112.
DE RecName: Full=UPF0304 protein YfbU;
GN Name=yfbU; OrderedLocusNames=b2294, JW2291;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [3]
RP IDENTIFICATION BY MASS SPECTROMETRY.
RC STRAIN=B / BL21;
RX PubMed=10493123;
RX DOI=10.1002/(sici)1522-2683(19990801)20:11<2181::aid-elps2181>3.0.co;2-q;
RA Fountoulakis M., Takacs M.-F., Berndt P., Langen H., Takacs B.;
RT "Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite
RT chromatography.";
RL Electrophoresis 20:2181-2195(1999).
RN [4]
RP INDUCTION.
RC STRAIN=K12 / MC4100 / ATCC 35695 / DSM 6574;
RX PubMed=21944167; DOI=10.1016/j.cell.2011.07.047;
RA Vesper O., Amitai S., Belitsky M., Byrgazov K., Kaberdina A.C.,
RA Engelberg-Kulka H., Moll I.;
RT "Selective translation of leaderless mRNAs by specialized ribosomes
RT generated by MazF in Escherichia coli.";
RL Cell 147:147-157(2011).
CC -!- INDUCTION: Only a leaderless mRNA has been detected in vivo, the first
CC nucleotide is the beginning of the start codon.
CC {ECO:0000269|PubMed:21944167}.
CC -!- SIMILARITY: Belongs to the UPF0304 family. {ECO:0000305}.
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DR EMBL; U00096; AAC75354.2; -; Genomic_DNA.
DR EMBL; AP009048; BAE76685.1; -; Genomic_DNA.
DR RefSeq; NP_416797.2; NC_000913.3.
DR RefSeq; WP_000426124.1; NZ_STEB01000008.1.
DR AlphaFoldDB; P0A8W8; -.
DR SMR; P0A8W8; -.
DR BioGRID; 4262966; 24.
DR DIP; DIP-48184N; -.
DR IntAct; P0A8W8; 11.
DR STRING; 511145.b2294; -.
DR jPOST; P0A8W8; -.
DR PaxDb; P0A8W8; -.
DR PRIDE; P0A8W8; -.
DR EnsemblBacteria; AAC75354; AAC75354; b2294.
DR EnsemblBacteria; BAE76685; BAE76685; BAE76685.
DR GeneID; 66673823; -.
DR GeneID; 946767; -.
DR KEGG; ecj:JW2291; -.
DR KEGG; eco:b2294; -.
DR PATRIC; fig|511145.12.peg.2388; -.
DR EchoBASE; EB3858; -.
DR eggNOG; COG3013; Bacteria.
DR HOGENOM; CLU_101021_1_0_6; -.
DR InParanoid; P0A8W8; -.
DR OMA; MYHALQV; -.
DR PhylomeDB; P0A8W8; -.
DR BioCyc; EcoCyc:G7188-MON; -.
DR PRO; PR:P0A8W8; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0005829; C:cytosol; IDA:EcoCyc.
DR GO; GO:0042802; F:identical protein binding; IDA:EcoCyc.
DR GO; GO:0006974; P:cellular response to DNA damage stimulus; IMP:EcoCyc.
DR Gene3D; 1.10.287.680; -; 1.
DR Gene3D; 1.10.3190.10; -; 1.
DR HAMAP; MF_00762; UPF0304; 1.
DR InterPro; IPR005587; UPF0304_YfbU.
DR InterPro; IPR023146; YfbU_alpha-helical_sf.
DR InterPro; IPR023145; YfbU_helix-hairpin_sf.
DR Pfam; PF03887; YfbU; 1.
DR PIRSF; PIRSF006272; UCP006272; 1.
PE 1: Evidence at protein level;
KW Reference proteome.
FT CHAIN 1..164
FT /note="UPF0304 protein YfbU"
FT /id="PRO_0000218162"
SQ SEQUENCE 164 AA; 19536 MW; 5599DD48CB373921 CRC64;
MEMTNAQRLI LSNQYKMMTM LDPANAERYR RLQTIIERGY GLQMRELDRE FGELKEETCR
TIIDIMEMYH ALHVSWSNLQ DQQSIDERRV TFLGFDAATE ARYLGYVRFM VNVEGRYTHF
DAGTHGFNAQ TPMWEKYQRM LNVWHACPRQ YHLSANEINQ IINA