YGIV_ECOLI
ID YGIV_ECOLI Reviewed; 160 AA.
AC Q46866; Q2M9H7; Q6BF52;
DT 27-MAR-2002, integrated into UniProtKB/Swiss-Prot.
DT 11-OCT-2004, sequence version 2.
DT 03-AUG-2022, entry version 130.
DE RecName: Full=Probable transcriptional regulator YgiV;
GN Name=ygiV; OrderedLocusNames=b3023, JW5502;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [2]
RP SEQUENCE REVISION TO 104-105.
RX PubMed=16397293; DOI=10.1093/nar/gkj405;
RA Riley M., Abe T., Arnaud M.B., Berlyn M.K.B., Blattner F.R.,
RA Chaudhuri R.R., Glasner J.D., Horiuchi T., Keseler I.M., Kosuge T.,
RA Mori H., Perna N.T., Plunkett G. III, Rudd K.E., Serres M.H., Thomas G.H.,
RA Thomson N.R., Wishart D., Wanner B.L.;
RT "Escherichia coli K-12: a cooperatively developed annotation snapshot
RT -- 2005.";
RL Nucleic Acids Res. 34:1-9(2006).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [4]
RP FUNCTION.
RC STRAIN=K12 / BW25113;
RX PubMed=18309357; DOI=10.1038/ismej.2008.24;
RA Zhang X.-S., Garcia-Contreras R., Wood T.K.;
RT "Escherichia coli transcription factor YncC (McbR) regulates colanic acid
RT and biofilm formation by repressing expression of periplasmic protein YbiM
RT (McbA).";
RL ISME J. 2:615-631(2008).
CC -!- FUNCTION: Represses expression of mcbR. {ECO:0000269|PubMed:18309357}.
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DR EMBL; U28377; AAA69191.1; -; Genomic_DNA.
DR EMBL; U00096; AAT48162.1; -; Genomic_DNA.
DR EMBL; AP009048; BAE77079.1; -; Genomic_DNA.
DR PIR; E65089; E65089.
DR RefSeq; WP_000183505.1; NZ_STEB01000001.1.
DR RefSeq; YP_026197.1; NC_000913.3.
DR AlphaFoldDB; Q46866; -.
DR SMR; Q46866; -.
DR BioGRID; 4259248; 65.
DR STRING; 511145.b3023; -.
DR PaxDb; Q46866; -.
DR PRIDE; Q46866; -.
DR EnsemblBacteria; AAT48162; AAT48162; b3023.
DR EnsemblBacteria; BAE77079; BAE77079; BAE77079.
DR GeneID; 945805; -.
DR KEGG; ecj:JW5502; -.
DR KEGG; eco:b3023; -.
DR PATRIC; fig|1411691.4.peg.3707; -.
DR EchoBASE; EB2842; -.
DR eggNOG; COG3449; Bacteria.
DR HOGENOM; CLU_129801_0_0_6; -.
DR InParanoid; Q46866; -.
DR OMA; RTHATFN; -.
DR PhylomeDB; Q46866; -.
DR BioCyc; EcoCyc:G7573-MON; -.
DR PRO; PR:Q46866; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0045892; P:negative regulation of transcription, DNA-templated; IMP:EcoCyc.
DR Gene3D; 3.20.80.10; -; 1.
DR InterPro; IPR010499; AraC_E-bd.
DR InterPro; IPR029442; GyrI-like.
DR InterPro; IPR011256; Reg_factor_effector_dom_sf.
DR Pfam; PF06445; GyrI-like; 1.
DR SMART; SM00871; AraC_E_bind; 1.
DR SUPFAM; SSF55136; SSF55136; 1.
PE 4: Predicted;
KW Reference proteome; Repressor; Transcription; Transcription regulation.
FT CHAIN 1..160
FT /note="Probable transcriptional regulator YgiV"
FT /id="PRO_0000201333"
FT CONFLICT 104..105
FT /note="HV -> QL (in Ref. 1; AAA69191)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 160 AA; 17827 MW; EEF5A02CBF2DCCF4 CRC64;
MTNLTLDVNI IDFPSIPVAM LPHRCSPELL NYSVAKFIMW RKETGLSPVN QSQTFGVAWD
DPATTAPEAF RFDICGSVSE PIPDNRYGVS NGELTGGRYA VARHVGELDD ISHTVWGIIR
HWLPASGEKM RKAPILFHYT NLAEGVTEQR LETDVYVPLA
