YGJH_ECOLI
ID YGJH_ECOLI Reviewed; 110 AA.
AC P42589; Q2M9D2;
DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot.
DT 01-NOV-1995, sequence version 1.
DT 03-AUG-2022, entry version 136.
DE RecName: Full=tRNA-binding protein YgjH;
GN Name=ygjH; OrderedLocusNames=b3074, JW3045;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [3]
RP X-RAY CRYSTALLOGRAPHY (1.87 ANGSTROMS).
RX PubMed=11101501; DOI=10.1093/emboj/19.23.6287;
RA Swairjo M.A., Morales A.J., Wang C.C., Ortiz A.R., Schimmel P.;
RT "Crystal structure of trbp111: a structure-specific tRNA-binding protein.";
RL EMBO J. 19:6287-6298(2000).
CC -!- SUBUNIT: Homodimer.
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DR EMBL; U18997; AAA57875.1; -; Genomic_DNA.
DR EMBL; U00096; AAC76109.1; -; Genomic_DNA.
DR EMBL; AP009048; BAE77124.1; -; Genomic_DNA.
DR PIR; G65095; G65095.
DR RefSeq; NP_417545.1; NC_000913.3.
DR RefSeq; WP_000450594.1; NZ_LN832404.1.
DR PDB; 3ERS; X-ray; 1.87 A; X=1-110.
DR PDBsum; 3ERS; -.
DR AlphaFoldDB; P42589; -.
DR SMR; P42589; -.
DR BioGRID; 4263446; 16.
DR DIP; DIP-12234N; -.
DR IntAct; P42589; 2.
DR STRING; 511145.b3074; -.
DR jPOST; P42589; -.
DR PaxDb; P42589; -.
DR PRIDE; P42589; -.
DR EnsemblBacteria; AAC76109; AAC76109; b3074.
DR EnsemblBacteria; BAE77124; BAE77124; BAE77124.
DR GeneID; 946251; -.
DR KEGG; ecj:JW3045; -.
DR KEGG; eco:b3074; -.
DR PATRIC; fig|1411691.4.peg.3656; -.
DR EchoBASE; EB2578; -.
DR eggNOG; COG0073; Bacteria.
DR HOGENOM; CLU_065946_3_2_6; -.
DR InParanoid; P42589; -.
DR OMA; CDKPVLL; -.
DR PhylomeDB; P42589; -.
DR BioCyc; EcoCyc:G7597-MON; -.
DR EvolutionaryTrace; P42589; -.
DR PRO; PR:P42589; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0000049; F:tRNA binding; IEA:UniProtKB-KW.
DR Gene3D; 2.40.50.140; -; 1.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR002547; tRNA-bd_dom.
DR Pfam; PF01588; tRNA_bind; 1.
DR SUPFAM; SSF50249; SSF50249; 1.
DR PROSITE; PS50886; TRBD; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome; RNA-binding; tRNA-binding.
FT CHAIN 1..110
FT /note="tRNA-binding protein YgjH"
FT /id="PRO_0000169420"
FT DOMAIN 8..110
FT /note="tRNA-binding"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00209"
FT HELIX 6..10
FT /evidence="ECO:0007829|PDB:3ERS"
FT STRAND 14..23
FT /evidence="ECO:0007829|PDB:3ERS"
FT STRAND 32..37
FT /evidence="ECO:0007829|PDB:3ERS"
FT STRAND 39..47
FT /evidence="ECO:0007829|PDB:3ERS"
FT TURN 50..52
FT /evidence="ECO:0007829|PDB:3ERS"
FT HELIX 55..58
FT /evidence="ECO:0007829|PDB:3ERS"
FT STRAND 62..66
FT /evidence="ECO:0007829|PDB:3ERS"
FT STRAND 72..74
FT /evidence="ECO:0007829|PDB:3ERS"
FT STRAND 77..79
FT /evidence="ECO:0007829|PDB:3ERS"
FT STRAND 85..87
FT /evidence="ECO:0007829|PDB:3ERS"
FT STRAND 94..96
FT /evidence="ECO:0007829|PDB:3ERS"
SQ SEQUENCE 110 AA; 12315 MW; 4C0F48971942EA98 CRC64;
METVAYADFA RLEMRVGKIV EVKRHENADK LYIVQVDVGQ KTLQTVTSLV PYYSEEELMG
KTVVVLCNLQ KAKMRGETSE CMLLCAETDD GSESVLLTPE RMMPAGVRVV
