ID   YHAM_BACLD              Reviewed;         314 AA.
AC   Q65LT6; Q62X75;
DT   02-AUG-2005, integrated into UniProtKB/Swiss-Prot.
DT   25-OCT-2004, sequence version 1.
DT   03-AUG-2022, entry version 100.
DE   RecName: Full=3'-5' exoribonuclease YhaM {ECO:0000255|HAMAP-Rule:MF_01427};
DE            EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01427};
GN   Name=yhaM {ECO:0000255|HAMAP-Rule:MF_01427};
GN   OrderedLocusNames=BLi01070, BL02861;
OS   Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 /
OS   NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46).
OC   Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX   NCBI_TaxID=279010;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375
RC   / NCTC 10341 / NRRL NRS-1264 / Gibson 46;
RX   PubMed=15383718; DOI=10.1159/000079829;
RA   Veith B., Herzberg C., Steckel S., Feesche J., Maurer K.H., Ehrenreich P.,
RA   Baeumer S., Henne A., Liesegang H., Merkl R., Ehrenreich A., Gottschalk G.;
RT   "The complete genome sequence of Bacillus licheniformis DSM13, an organism
RT   with great industrial potential.";
RL   J. Mol. Microbiol. Biotechnol. 7:204-211(2004).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375
RC   / NCTC 10341 / NRRL NRS-1264 / Gibson 46;
RX   PubMed=15461803; DOI=10.1186/gb-2004-5-10-r77;
RA   Rey M.W., Ramaiya P., Nelson B.A., Brody-Karpin S.D., Zaretsky E.J.,
RA   Tang M., Lopez de Leon A., Xiang H., Gusti V., Clausen I.G., Olsen P.B.,
RA   Rasmussen M.D., Andersen J.T., Joergensen P.L., Larsen T.S., Sorokin A.,
RA   Bolotin A., Lapidus A., Galleron N., Ehrlich S.D., Berka R.M.;
RT   "Complete genome sequence of the industrial bacterium Bacillus
RT   licheniformis and comparisons with closely related Bacillus species.";
RL   Genome Biol. 5:R77.1-R77.12(2004).
RN   [3]
RP   SEQUENCE REVISION TO 311-314.
RA   Berka R.M., Rey M.W., Ramaiya P.;
RL   Submitted (APR-2007) to the EMBL/GenBank/DDBJ databases.
CC   -!- FUNCTION: Shows a 3'-5' exoribonuclease activity. {ECO:0000255|HAMAP-
CC       Rule:MF_01427}.
CC   -!- SIMILARITY: Belongs to the YhaM family. {ECO:0000255|HAMAP-
CC       Rule:MF_01427}.
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DR   EMBL; AE017333; AAU39978.1; -; Genomic_DNA.
DR   EMBL; CP000002; AAU22633.2; -; Genomic_DNA.
DR   RefSeq; WP_003180239.1; NC_006322.1.
DR   AlphaFoldDB; Q65LT6; -.
DR   STRING; 279010.BL02861; -.
DR   EnsemblBacteria; AAU22633; AAU22633; BL02861.
DR   GeneID; 66216799; -.
DR   KEGG; bld:BLi01070; -.
DR   KEGG; bli:BL02861; -.
DR   eggNOG; COG3481; Bacteria.
DR   HOGENOM; CLU_056349_2_0_9; -.
DR   OMA; NLVGHLV; -.
DR   OrthoDB; 2018439at2; -.
DR   BioCyc; BLIC279010:BLI_RS05300-MON; -.
DR   Proteomes; UP000000606; Chromosome.
DR   GO; GO:0000175; F:3'-5'-exoribonuclease activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   CDD; cd00077; HDc; 1.
DR   Gene3D; 2.40.50.140; -; 1.
DR   HAMAP; MF_01427; 3_5_Exoribonuc_YhaM; 1.
DR   InterPro; IPR020873; 3'-5'_exoribonuclease_YhaM.
DR   InterPro; IPR003607; HD/PDEase_dom.
DR   InterPro; IPR006674; HD_domain.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   Pfam; PF01966; HD; 1.
DR   SMART; SM00471; HDc; 1.
DR   PROSITE; PS51831; HD; 1.
PE   3: Inferred from homology;
KW   DNA-binding; Exonuclease; Hydrolase; Nuclease; Reference proteome.
FT   CHAIN           1..314
FT                   /note="3'-5' exoribonuclease YhaM"
FT                   /id="PRO_0000109859"
FT   DOMAIN          163..279
FT                   /note="HD"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01175"
FT   DNA_BIND        14..90
FT                   /note="OB"
SQ   SEQUENCE   314 AA;  35595 MW;  3D99B48F9109063A CRC64;
     MAKGIMLHEV GEQVDLYLLI KSSTKGIASN GKPFLTLMLQ DQSGDIEAKL WDAKQQDEVT
     YGPQTIVKVV GDIHHYRGRN QLKLRNIRPA GENENVKIDD FLETAPIPKN EMMDAVTQYI
     FEMKNPNIQR ITRHLVKKYG KEFIDYPAAT KNHHEFVSGL AYHVVSMLNL AKSVADLYPS
     LDRDLLYAGV ILHDLGKVKE LSGPVSTTYT VEGNLLGHIS IMVTEIAKAA EELQIDSEEV
     LILQHLILSH HGKPEWGSPK PPMVKEAEIL HYIDNLDAKI NMMDRALERV KPGEYTERVF
     ALDNRSFYKP VFHK