ID   YHAM_LISIN              Reviewed;         313 AA.
AC   Q929F3;
DT   02-AUG-2005, integrated into UniProtKB/Swiss-Prot.
DT   01-DEC-2001, sequence version 1.
DT   25-MAY-2022, entry version 110.
DE   RecName: Full=3'-5' exoribonuclease YhaM {ECO:0000255|HAMAP-Rule:MF_01427};
DE            EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_01427};
GN   Name=yhaM {ECO:0000255|HAMAP-Rule:MF_01427}; OrderedLocusNames=lin2323;
OS   Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262).
OC   Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria.
OX   NCBI_TaxID=272626;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-680 / CLIP 11262;
RX   PubMed=11679669; DOI=10.1126/science.1063447;
RA   Glaser P., Frangeul L., Buchrieser C., Rusniok C., Amend A., Baquero F.,
RA   Berche P., Bloecker H., Brandt P., Chakraborty T., Charbit A.,
RA   Chetouani F., Couve E., de Daruvar A., Dehoux P., Domann E.,
RA   Dominguez-Bernal G., Duchaud E., Durant L., Dussurget O., Entian K.-D.,
RA   Fsihi H., Garcia-del Portillo F., Garrido P., Gautier L., Goebel W.,
RA   Gomez-Lopez N., Hain T., Hauf J., Jackson D., Jones L.-M., Kaerst U.,
RA   Kreft J., Kuhn M., Kunst F., Kurapkat G., Madueno E., Maitournam A.,
RA   Mata Vicente J., Ng E., Nedjari H., Nordsiek G., Novella S., de Pablos B.,
RA   Perez-Diaz J.-C., Purcell R., Remmel B., Rose M., Schlueter T., Simoes N.,
RA   Tierrez A., Vazquez-Boland J.-A., Voss H., Wehland J., Cossart P.;
RT   "Comparative genomics of Listeria species.";
RL   Science 294:849-852(2001).
CC   -!- FUNCTION: Shows a 3'-5' exoribonuclease activity. {ECO:0000255|HAMAP-
CC       Rule:MF_01427}.
CC   -!- SIMILARITY: Belongs to the YhaM family. {ECO:0000255|HAMAP-
CC       Rule:MF_01427}.
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DR   EMBL; AL596171; CAC97551.1; -; Genomic_DNA.
DR   PIR; AG1722; AG1722.
DR   RefSeq; WP_010991127.1; NC_003212.1.
DR   AlphaFoldDB; Q929F3; -.
DR   SMR; Q929F3; -.
DR   STRING; 272626.lin2323; -.
DR   EnsemblBacteria; CAC97551; CAC97551; CAC97551.
DR   KEGG; lin:lin2323; -.
DR   eggNOG; COG3481; Bacteria.
DR   HOGENOM; CLU_056349_2_0_9; -.
DR   OMA; NLVGHLV; -.
DR   OrthoDB; 2018439at2; -.
DR   Proteomes; UP000002513; Chromosome.
DR   GO; GO:0000175; F:3'-5'-exoribonuclease activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   CDD; cd00077; HDc; 1.
DR   Gene3D; 2.40.50.140; -; 1.
DR   HAMAP; MF_01427; 3_5_Exoribonuc_YhaM; 1.
DR   InterPro; IPR020873; 3'-5'_exoribonuclease_YhaM.
DR   InterPro; IPR003607; HD/PDEase_dom.
DR   InterPro; IPR006674; HD_domain.
DR   InterPro; IPR012340; NA-bd_OB-fold.
DR   Pfam; PF01966; HD; 1.
DR   PROSITE; PS51831; HD; 1.
PE   3: Inferred from homology;
KW   DNA-binding; Exonuclease; Hydrolase; Nuclease.
FT   CHAIN           1..313
FT                   /note="3'-5' exoribonuclease YhaM"
FT                   /id="PRO_0000109863"
FT   DOMAIN          163..279
FT                   /note="HD"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU01175"
FT   DNA_BIND        22..90
FT                   /note="OB"
SQ   SEQUENCE   313 AA;  35455 MW;  94179D88FA5D024F CRC64;
     MEKRLLDYEV GETVELFLLI KSSVKGTASN GKPFLSLVLQ DKSGELEAKL WDVKESDEIN
     YGVQQIVHLM GDIQNYRGRK QLKIRQIRQA SPLDGVSASE FMETAPINKD EMADEITQYI
     FEMKNANLQR ITRALLKKYQ DDFYDYPAAM RHHHEFVSGL SFHVVSMLRL AKSVADLYPT
     VNRDLLYAGV ILHDLGKVIE LSGPVSTTYT LEGNLIGHIS IVVEEVSKIA EELSIDGEEV
     VVLKHVLLSH HGKGEWGSPK PPLVREAEIL HQIDLMDASL NMMDKVLKHT KPGEFSERVF
     GLDNRSFYNP TFE