CBIC_LEPIN
ID CBIC_LEPIN Reviewed; 220 AA.
AC Q8EXP7;
DT 01-OCT-2014, integrated into UniProtKB/Swiss-Prot.
DT 15-JUN-2010, sequence version 2.
DT 03-AUG-2022, entry version 99.
DE RecName: Full=Cobalt-precorrin-8 methylmutase;
DE EC=5.4.99.60;
DE AltName: Full=Cobalt-precorrin isomerase;
GN Name=cbiC; OrderedLocusNames=LB_161;
OS Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strain
OS 56601).
OC Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.
OX NCBI_TaxID=189518;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=56601;
RX PubMed=12712204; DOI=10.1038/nature01597;
RA Ren S.-X., Fu G., Jiang X.-G., Zeng R., Miao Y.-G., Xu H., Zhang Y.-X.,
RA Xiong H., Lu G., Lu L.-F., Jiang H.-Q., Jia J., Tu Y.-F., Jiang J.-X.,
RA Gu W.-Y., Zhang Y.-Q., Cai Z., Sheng H.-H., Yin H.-F., Zhang Y., Zhu G.-F.,
RA Wan M., Huang H.-L., Qian Z., Wang S.-Y., Ma W., Yao Z.-J., Shen Y.,
RA Qiang B.-Q., Xia Q.-C., Guo X.-K., Danchin A., Saint Girons I.,
RA Somerville R.L., Wen Y.-M., Shi M.-H., Chen Z., Xu J.-G., Zhao G.-P.;
RT "Unique physiological and pathogenic features of Leptospira interrogans
RT revealed by whole-genome sequencing.";
RL Nature 422:888-893(2003).
RN [2]
RP X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS), AND SUBUNIT.
RX PubMed=16427313; DOI=10.1016/j.jsb.2005.11.011;
RA Xue Y., Wei Z., Li X., Gong W.;
RT "The crystal structure of putative precorrin isomerase CbiC in cobalamin
RT biosynthesis.";
RL J. Struct. Biol. 153:307-311(2006).
CC -!- FUNCTION: Catalyzes the conversion of cobalt-precorrin-8 to cobyrinate.
CC {ECO:0000250}.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=Co-precorrin-8X = cob(II)yrinate; Xref=Rhea:RHEA:16209,
CC ChEBI:CHEBI:58894, ChEBI:CHEBI:70792; EC=5.4.99.60;
CC -!- PATHWAY: Cofactor biosynthesis; adenosylcobalamin biosynthesis;
CC cob(II)yrinate a,c-diamide from sirohydrochlorin (anaerobic route):
CC step 9/10.
CC -!- SUBUNIT: Homodimer. {ECO:0000269|PubMed:16427313}.
CC -!- SIMILARITY: Belongs to the CobH/CbiC family. {ECO:0000305}.
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DR EMBL; AE010301; AAN51720.2; -; Genomic_DNA.
DR RefSeq; NP_714705.2; NC_004343.2.
DR PDB; 2AFR; X-ray; 2.30 A; A=1-220.
DR PDB; 2AFV; X-ray; 3.00 A; A/B=1-220.
DR PDBsum; 2AFR; -.
DR PDBsum; 2AFV; -.
DR AlphaFoldDB; Q8EXP7; -.
DR SMR; Q8EXP7; -.
DR STRING; 189518.LB_161; -.
DR EnsemblBacteria; AAN51720; AAN51720; LB_161.
DR KEGG; lil:LB_161; -.
DR PATRIC; fig|189518.3.peg.4489; -.
DR HOGENOM; CLU_084703_1_1_12; -.
DR InParanoid; Q8EXP7; -.
DR BRENDA; 5.4.99.60; 2986.
DR UniPathway; UPA00148; UER00230.
DR EvolutionaryTrace; Q8EXP7; -.
DR Proteomes; UP000001408; Chromosome II.
DR GO; GO:0043778; F:cobalt-precorrin-8 methylmutase activity; IEA:UniProtKB-EC.
DR GO; GO:0016993; F:precorrin-8X methylmutase activity; IEA:InterPro.
DR GO; GO:0009236; P:cobalamin biosynthetic process; IEA:UniProtKB-UniPathway.
DR Gene3D; 3.40.50.10230; -; 1.
DR InterPro; IPR003722; Cbl_synth_CobH/CbiC.
DR InterPro; IPR036588; CobH/CbiC_sf.
DR Pfam; PF02570; CbiC; 1.
DR SUPFAM; SSF63965; SSF63965; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Cobalamin biosynthesis; Isomerase; Reference proteome.
FT CHAIN 1..220
FT /note="Cobalt-precorrin-8 methylmutase"
FT /id="PRO_0000430345"
FT ACT_SITE 41
FT /note="Proton donor/acceptor"
FT /evidence="ECO:0000250"
FT BINDING 15
FT /ligand="substrate"
FT /evidence="ECO:0000250"
FT BINDING 38
FT /ligand="substrate"
FT /evidence="ECO:0000250"
FT HELIX 6..23
FT /evidence="ECO:0007829|PDB:2AFR"
FT HELIX 30..43
FT /evidence="ECO:0007829|PDB:2AFR"
FT HELIX 48..51
FT /evidence="ECO:0007829|PDB:2AFR"
FT STRAND 52..54
FT /evidence="ECO:0007829|PDB:2AFR"
FT HELIX 58..67
FT /evidence="ECO:0007829|PDB:2AFR"
FT STRAND 71..76
FT /evidence="ECO:0007829|PDB:2AFR"
FT HELIX 77..80
FT /evidence="ECO:0007829|PDB:2AFR"
FT HELIX 85..89
FT /evidence="ECO:0007829|PDB:2AFR"
FT TURN 90..92
FT /evidence="ECO:0007829|PDB:2AFR"
FT STRAND 94..96
FT /evidence="ECO:0007829|PDB:2AFR"
FT HELIX 102..110
FT /evidence="ECO:0007829|PDB:2AFR"
FT HELIX 115..125
FT /evidence="ECO:0007829|PDB:2AFR"
FT STRAND 133..138
FT /evidence="ECO:0007829|PDB:2AFR"
FT HELIX 140..153
FT /evidence="ECO:0007829|PDB:2AFR"
FT STRAND 158..162
FT /evidence="ECO:0007829|PDB:2AFR"
FT STRAND 167..169
FT /evidence="ECO:0007829|PDB:2AFR"
FT HELIX 170..182
FT /evidence="ECO:0007829|PDB:2AFR"
FT STRAND 190..193
FT /evidence="ECO:0007829|PDB:2AFR"
FT HELIX 200..216
FT /evidence="ECO:0007829|PDB:2AFR"
SQ SEQUENCE 220 AA; 24424 MW; 61BB8D07D57D434A CRC64;
MRQITNLGRN IENKSFSIID EEAGPHSFAQ EEWEVVRRII HATADFDYKN ITKIHPQAID
SGIQALKKGC PIVCDVQMIL SGLNPERLKV YGCKTYCFIS DEDVIENAKR KNSTRAIESI
QKANSFNLLN ESIIVIGNAP TALLEIEKLI RQEGIKPALI VGVPVGFVSA KESKESILKL
EYYNVTSIPY ILTMGRKGGS TIAVAILHAL LLLSSKRGER