YHGF_ECOLI
ID YHGF_ECOLI Reviewed; 773 AA.
AC P46837; P76689; Q2M772;
DT 01-NOV-1995, integrated into UniProtKB/Swiss-Prot.
DT 15-JUL-1999, sequence version 3.
DT 03-AUG-2022, entry version 150.
DE RecName: Full=Protein YhgF;
GN Name=yhgF; OrderedLocusNames=b3407, JW3370;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [3]
RP IDENTIFICATION BY MASS SPECTROMETRY.
RC STRAIN=B / BL21;
RX PubMed=10493123;
RX DOI=10.1002/(sici)1522-2683(19990801)20:11<2181::aid-elps2181>3.0.co;2-q;
RA Fountoulakis M., Takacs M.-F., Berndt P., Langen H., Takacs B.;
RT "Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite
RT chromatography.";
RL Electrophoresis 20:2181-2195(1999).
CC -!- SEQUENCE CAUTION:
CC Sequence=AAA58204.1; Type=Miscellaneous discrepancy; Note=Wrong choice of frame.; Evidence={ECO:0000305};
CC Sequence=AAA58205.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
CC Sequence=AAA58205.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; U18997; AAA58204.1; ALT_SEQ; Genomic_DNA.
DR EMBL; U18997; AAA58205.1; ALT_SEQ; Genomic_DNA.
DR EMBL; U00096; AAC76432.2; -; Genomic_DNA.
DR EMBL; AP009048; BAE77884.1; -; Genomic_DNA.
DR PIR; B65136; B65136.
DR RefSeq; NP_417866.4; NC_000913.3.
DR RefSeq; WP_000980727.1; NZ_LN832404.1.
DR AlphaFoldDB; P46837; -.
DR SMR; P46837; -.
DR BioGRID; 4261725; 54.
DR BioGRID; 852220; 1.
DR DIP; DIP-12337N; -.
DR IntAct; P46837; 10.
DR STRING; 511145.b3407; -.
DR jPOST; P46837; -.
DR PaxDb; P46837; -.
DR PRIDE; P46837; -.
DR EnsemblBacteria; AAC76432; AAC76432; b3407.
DR EnsemblBacteria; BAE77884; BAE77884; BAE77884.
DR GeneID; 947911; -.
DR KEGG; ecj:JW3370; -.
DR KEGG; eco:b3407; -.
DR PATRIC; fig|1411691.4.peg.3322; -.
DR EchoBASE; EB2768; -.
DR eggNOG; COG2183; Bacteria.
DR HOGENOM; CLU_009833_0_2_6; -.
DR InParanoid; P46837; -.
DR OMA; RWAWRTR; -.
DR PhylomeDB; P46837; -.
DR BioCyc; EcoCyc:G7746-MON; -.
DR PRO; PR:P46837; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0005829; C:cytosol; IDA:EcoCyc.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0003735; F:structural constituent of ribosome; IBA:GO_Central.
DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR GO; GO:0010212; P:response to ionizing radiation; IMP:EcoCyc.
DR GO; GO:0006412; P:translation; IBA:GO_Central.
DR CDD; cd05685; S1_Tex; 1.
DR Gene3D; 1.10.10.650; -; 1.
DR Gene3D; 1.10.3500.10; -; 1.
DR Gene3D; 2.40.50.140; -; 1.
DR Gene3D; 3.30.420.140; -; 1.
DR InterPro; IPR041692; HHH_9.
DR InterPro; IPR012340; NA-bd_OB-fold.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR010994; RuvA_2-like.
DR InterPro; IPR022967; S1_dom.
DR InterPro; IPR003029; S1_domain.
DR InterPro; IPR044146; S1_Tex.
DR InterPro; IPR023323; Tex-like_dom_sf.
DR InterPro; IPR023319; Tex-like_HTH_dom_sf.
DR InterPro; IPR018974; Tex-like_N.
DR InterPro; IPR032639; Tex_YqgF.
DR InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR Pfam; PF17674; HHH_9; 1.
DR Pfam; PF00575; S1; 1.
DR Pfam; PF09371; Tex_N; 1.
DR Pfam; PF16921; Tex_YqgF; 1.
DR SMART; SM00316; S1; 1.
DR SMART; SM00732; YqgFc; 1.
DR SUPFAM; SSF47781; SSF47781; 2.
DR SUPFAM; SSF50249; SSF50249; 1.
DR SUPFAM; SSF53098; SSF53098; 1.
DR PROSITE; PS50126; S1; 1.
PE 1: Evidence at protein level;
KW Reference proteome; RNA-binding.
FT CHAIN 1..773
FT /note="Protein YhgF"
FT /id="PRO_0000215104"
FT DOMAIN 651..720
FT /note="S1 motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00180"
FT REGION 721..773
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 754..755
FT /note="QP -> HA (in Ref. 1; AAA58205)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 773 AA; 85120 MW; EA54D9ED952A8229 CRC64;
MMNDSFCRII AGEIQARPEQ VDAAVRLLDE GNTVPFIARY RKEITGGLDD TQLRNLETRL
SYLRELEERR QAILKSISEQ GKLTDDLAKA INATLSKTEL EDLYLPYKPK RRTRGQIAIE
AGLEPLADLL WSDPSHTPEV AAAQYVYADK GVADTKAALD GARYILMERF AEDAALLAKV
RDYLWKNAHL VSTVVSGKEE EGAKFRDYFD HHEPLSTVPS HRALAMFRGR NEGVLQLSLN
ADPQFDEPPK ESYCEQIIMD HLGLRLNNAP ADSWRKGVVS WTWRIKVLMH LETELMGTVR
ERAEDEAINV FARNLHDLLM AAPAGLRATM GLDPGLRTGV KVAVVDATGK LVATDTIYPH
TGQAAKAAMT VAALCEKHNV ELVAIGNGTA SRETERFYLD VQKQFPKVTA QKVIVSEAGA
SVYSASELAA QEFPDLDVSL RGAVSIARRL QDPLAELVKI DPKSIGVGQY QHDVSQTQLA
RKLDAVVEDC VNAVGVDLNT ASVPLLTRVA GLTRMMAQNI VAWRDENGQF QNRQQLLKVS
RLGPKAFEQC AGFLRINHGD NPLDASTVHP EAYPVVERIL AATQQALKDL MGNSSELRNL
KASDFTDEKF GVPTVTDIIK ELEKPGRDPR PEFKTAQFAD GVETMNDLQP GMILEGAVTN
VTNFGAFVDI GVHQDGLVHI SSLSNKFVED PHTVVKAGDI VKVKVLEVDL QRKRIALTMR
LDEQPGETNA RRGGGNERPQ NNRPAAKPRG REAQPAGNSA MMDALAAAMG KKR
