YHJD_ECOLI
ID YHJD_ECOLI Reviewed; 337 AA.
AC P37642; Q2M7I4;
DT 01-OCT-1994, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-1994, sequence version 1.
DT 03-AUG-2022, entry version 149.
DE RecName: Full=Inner membrane protein YhjD;
GN Name=yhjD; OrderedLocusNames=b3522, JW3490;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=8041620; DOI=10.1093/nar/22.13.2576;
RA Sofia H.J., Burland V., Daniels D.L., Plunkett G. III, Blattner F.R.;
RT "Analysis of the Escherichia coli genome. V. DNA sequence of the region
RT from 76.0 to 81.5 minutes.";
RL Nucleic Acids Res. 22:2576-2586(1994).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [4]
RP TOPOLOGY [LARGE SCALE ANALYSIS].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=15919996; DOI=10.1126/science.1109730;
RA Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.;
RT "Global topology analysis of the Escherichia coli inner membrane
RT proteome.";
RL Science 308:1321-1323(2005).
CC -!- SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane protein.
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DR EMBL; U00039; AAB18498.1; -; Genomic_DNA.
DR EMBL; U00096; AAC76547.1; -; Genomic_DNA.
DR EMBL; AP009048; BAE77772.1; -; Genomic_DNA.
DR PIR; S47742; S47742.
DR RefSeq; NP_417979.1; NC_000913.3.
DR RefSeq; WP_000191237.1; NZ_SSZK01000039.1.
DR AlphaFoldDB; P37642; -.
DR BioGRID; 4262161; 590.
DR DIP; DIP-12379N; -.
DR IntAct; P37642; 2.
DR STRING; 511145.b3522; -.
DR TCDB; 9.B.126.1.1; the putative lipid iv exporter (yhjd) family.
DR jPOST; P37642; -.
DR PaxDb; P37642; -.
DR PRIDE; P37642; -.
DR EnsemblBacteria; AAC76547; AAC76547; b3522.
DR EnsemblBacteria; BAE77772; BAE77772; BAE77772.
DR GeneID; 948033; -.
DR KEGG; ecj:JW3490; -.
DR KEGG; eco:b3522; -.
DR PATRIC; fig|1411691.4.peg.3196; -.
DR EchoBASE; EB2159; -.
DR eggNOG; COG1295; Bacteria.
DR HOGENOM; CLU_050028_0_2_6; -.
DR InParanoid; P37642; -.
DR OMA; MGNQFGA; -.
DR PhylomeDB; P37642; -.
DR BioCyc; EcoCyc:EG12248-MON; -.
DR PRO; PR:P37642; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0005887; C:integral component of plasma membrane; ISM:EcoCyc.
DR GO; GO:0005886; C:plasma membrane; IDA:EcoCyc.
DR GO; GO:0015920; P:lipopolysaccharide transport; IMP:EcoCyc.
DR InterPro; IPR005274; IM_pro_YhjD.
DR InterPro; IPR017039; Virul_fac_BrkB.
DR PANTHER; PTHR30213; PTHR30213; 1.
DR Pfam; PF03631; Virul_fac_BrkB; 1.
DR PIRSF; PIRSF035875; RNase_BN; 1.
DR TIGRFAMs; TIGR00766; TIGR00766; 1.
PE 1: Evidence at protein level;
KW Cell inner membrane; Cell membrane; Membrane; Reference proteome;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..337
FT /note="Inner membrane protein YhjD"
FT /id="PRO_0000169570"
FT TOPO_DOM 1..74
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 75..97
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 98..133
FT /note="Periplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 134..156
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 157..185
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 186..208
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 209..227
FT /note="Periplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 228..250
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 251..261
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 262..284
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 285..298
FT /note="Periplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 299..321
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 322..337
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT REGION 1..31
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..24
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 337 AA; 37911 MW; C41B2A224902E311 CRC64;
MTQENEIKRP IQDLEHEPIK PLDNSEKGSK VSQALETVTT TAEKVQRQPV IAHLIRATER
FNDRLGNQFG AAITYFSFLS MIPILMVSFA AGGFVLASHP MLLQDIFDKI LQNISDPTLA
ATLKNTINTA VQQRTTVGLV GLAVALYSGI NWMGNLREAI RAQSRDVWER SPQDQEKFWV
KYLRDFISLI GLLIALIVTL SITSVAGSAQ QMIISALHLN SIEWLKPTWR LIGLAISIFA
NYLLFFWIFW RLPRHRPRKK ALIRGTFLAA IGFEVIKIVM TYTLPSLMKS PSGAAFGSVL
GLMAFFYFFA RLTLFCAAWI ATAEYKDDPR MPGKTQP
