ID   YIDZ_ECOLI              Reviewed;         319 AA.
AC   P31463; Q2M827;
DT   01-JUL-1993, integrated into UniProtKB/Swiss-Prot.
DT   01-JUL-1993, sequence version 1.
DT   03-AUG-2022, entry version 157.
DE   RecName: Full=HTH-type transcriptional regulator YidZ;
GN   Name=yidZ; OrderedLocusNames=b3711, JW3689;
OS   Escherichia coli (strain K12).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Enterobacteriaceae; Escherichia.
OX   NCBI_TaxID=83333;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / MG1655 / ATCC 47076;
RX   PubMed=7686882; DOI=10.1006/geno.1993.1230;
RA   Burland V.D., Plunkett G. III, Daniels D.L., Blattner F.R.;
RT   "DNA sequence and analysis of 136 kilobases of the Escherichia coli genome:
RT   organizational symmetry around the origin of replication.";
RL   Genomics 16:551-561(1993).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / MG1655 / ATCC 47076;
RX   PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA   Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA   Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA   Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA   Shao Y.;
RT   "The complete genome sequence of Escherichia coli K-12.";
RL   Science 277:1453-1462(1997).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX   PubMed=16738553; DOI=10.1038/msb4100049;
RA   Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA   Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT   "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT   and W3110.";
RL   Mol. Syst. Biol. 2:E1-E5(2006).
RN   [4]
RP   CHARACTERIZATION.
RX   PubMed=15546870; DOI=10.1074/jbc.m411070200;
RA   Justino M.C., Vicente J.B., Teixeira M., Saraiva L.M.;
RT   "New genes implicated in the protection of anaerobically grown Escherichia
RT   coli against nitric oxide.";
RL   J. Biol. Chem. 280:2636-2643(2005).
CC   -!- FUNCTION: Involved in anaerobic NO protection.
CC   -!- SIMILARITY: Belongs to the LysR transcriptional regulatory family.
CC       {ECO:0000305}.
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DR   EMBL; L10328; AAA62062.1; -; Genomic_DNA.
DR   EMBL; U00096; AAC76734.1; -; Genomic_DNA.
DR   EMBL; AP009048; BAE77579.1; -; Genomic_DNA.
DR   PIR; H65173; H65173.
DR   RefSeq; NP_418167.1; NC_000913.3.
DR   RefSeq; WP_001311238.1; NZ_SSZK01000035.1.
DR   AlphaFoldDB; P31463; -.
DR   SMR; P31463; -.
DR   BioGRID; 4262597; 8.
DR   DIP; DIP-12458N; -.
DR   IntAct; P31463; 2.
DR   STRING; 511145.b3711; -.
DR   PaxDb; P31463; -.
DR   PRIDE; P31463; -.
DR   DNASU; 948227; -.
DR   EnsemblBacteria; AAC76734; AAC76734; b3711.
DR   EnsemblBacteria; BAE77579; BAE77579; BAE77579.
DR   GeneID; 948227; -.
DR   KEGG; ecj:JW3689; -.
DR   KEGG; eco:b3711; -.
DR   PATRIC; fig|1411691.4.peg.2990; -.
DR   EchoBASE; EB1672; -.
DR   eggNOG; COG0583; Bacteria.
DR   HOGENOM; CLU_039613_39_2_6; -.
DR   OMA; QDNDPGE; -.
DR   PhylomeDB; P31463; -.
DR   BioCyc; EcoCyc:EG11721-MON; -.
DR   PRO; PR:P31463; -.
DR   Proteomes; UP000000318; Chromosome.
DR   Proteomes; UP000000625; Chromosome.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:UniProtKB-UniRule.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IBA:GO_Central.
DR   GO; GO:0006351; P:transcription, DNA-templated; IMP:EcoCyc.
DR   CDD; cd08417; PBP2_Nitroaromatics_like; 1.
DR   Gene3D; 1.10.10.10; -; 1.
DR   HAMAP; MF_01607; HTH_type_YidZ; 1.
DR   InterPro; IPR005119; LysR_subst-bd.
DR   InterPro; IPR000847; Tscrpt_reg_HTH_LysR.
DR   InterPro; IPR023746; Tscrpt_reg_YidZ.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   InterPro; IPR036390; WH_DNA-bd_sf.
DR   InterPro; IPR037402; YidZ_PBP2.
DR   Pfam; PF00126; HTH_1; 1.
DR   Pfam; PF03466; LysR_substrate; 1.
DR   SUPFAM; SSF46785; SSF46785; 1.
DR   PROSITE; PS50931; HTH_LYSR; 1.
PE   1: Evidence at protein level;
KW   DNA-binding; Reference proteome; Transcription; Transcription regulation.
FT   CHAIN           1..319
FT                   /note="HTH-type transcriptional regulator YidZ"
FT                   /id="PRO_0000105801"
FT   DOMAIN          8..65
FT                   /note="HTH lysR-type"
FT   DNA_BIND        25..44
FT                   /note="H-T-H motif"
FT                   /evidence="ECO:0000250"
SQ   SEQUENCE   319 AA;  36882 MW;  8E49CF88397EB125 CRC64;
     MKKSITTLDL NLLLCLQLLM QERSVTKAAK RINVTPSAVS KSLAKLRAWF DDPLFVNSPL
     GLSPTPLMVS MEQNLAEWMQ MSNLLLDKPH HQTPRGLKFE LAAESPLMMI MLNALSKQIY
     QRYPQATIKL RNWDYDSLDA ITRGEVDIGF SGRESHPRSR ELLSSLPLAI DYEVLFSDVP
     CVWLRKDHPA LHQTWNLDTF LRYPHISICW EQSDTWALDN VLQELGRERT IAMSLPEFEQ
     SLFMAAQPDN LLLATAPRYC QYYNQLHQLP LVALPLPFDE SQQKKLEVPF TLLWHKRNSH
     NPKIVWLRET IKNLYASMA