YIJD_ECOLI
ID YIJD_ECOLI Reviewed; 119 AA.
AC P0AF40; P27308; Q2M8Q9;
DT 20-DEC-2005, integrated into UniProtKB/Swiss-Prot.
DT 20-DEC-2005, sequence version 1.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=Inner membrane protein YijD;
GN Name=yijD; OrderedLocusNames=b3964, JW3936;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=K12;
RX PubMed=1447162; DOI=10.1128/jb.174.23.7878-7879.1992;
RA Gustafsson C., Warne S.R.;
RT "Physical map of the oxyR-trmA region (minute 89.3) of the Escherichia coli
RT chromosome.";
RL J. Bacteriol. 174:7878-7879(1992).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=8265357; DOI=10.1093/nar/21.23.5408;
RA Blattner F.R., Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L.;
RT "Analysis of the Escherichia coli genome. IV. DNA sequence of the region
RT from 89.2 to 92.8 minutes.";
RL Nucleic Acids Res. 21:5408-5417(1993).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [5]
RP SUBCELLULAR LOCATION, AND TOPOLOGY [LARGE SCALE ANALYSIS].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=15919996; DOI=10.1126/science.1109730;
RA Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.;
RT "Global topology analysis of the Escherichia coli inner membrane
RT proteome.";
RL Science 308:1321-1323(2005).
RN [6]
RP DISRUPTION PHENOTYPE.
RC STRAIN=K12;
RX PubMed=19854834; DOI=10.1074/jbc.m109.068239;
RA Zhu K., Zhang Y.M., Rock C.O.;
RT "Transcriptional regulation of membrane lipid homeostasis in Escherichia
RT coli.";
RL J. Biol. Chem. 284:34880-34888(2009).
CC -!- SUBCELLULAR LOCATION: Cell inner membrane
CC {ECO:0000269|PubMed:15919996}; Multi-pass membrane protein
CC {ECO:0000305}.
CC -!- DISRUPTION PHENOTYPE: No alteration in fatty acid composition.
CC {ECO:0000269|PubMed:19854834}.
CC -!- MISCELLANEOUS: Probably part of the fabR-yijD operon.
CC {ECO:0000305|PubMed:19854834}.
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DR EMBL; X66026; CAA46824.1; -; Genomic_DNA.
DR EMBL; U00006; AAC43070.1; -; Genomic_DNA.
DR EMBL; U00096; AAC76946.1; -; Genomic_DNA.
DR EMBL; AP009048; BAE77347.1; -; Genomic_DNA.
DR PIR; G65203; G65203.
DR PIR; S21565; S21565.
DR RefSeq; NP_418399.1; NC_000913.3.
DR RefSeq; WP_000806411.1; NZ_STEB01000037.1.
DR AlphaFoldDB; P0AF40; -.
DR BioGRID; 4262183; 10.
DR BioGRID; 852755; 2.
DR IntAct; P0AF40; 2.
DR STRING; 511145.b3964; -.
DR PaxDb; P0AF40; -.
DR PRIDE; P0AF40; -.
DR EnsemblBacteria; AAC76946; AAC76946; b3964.
DR EnsemblBacteria; BAE77347; BAE77347; BAE77347.
DR GeneID; 67417515; -.
DR GeneID; 948459; -.
DR KEGG; ecj:JW3936; -.
DR KEGG; eco:b3964; -.
DR PATRIC; fig|1411691.4.peg.2740; -.
DR EchoBASE; EB1368; -.
DR eggNOG; ENOG5031GYK; Bacteria.
DR HOGENOM; CLU_138008_1_0_6; -.
DR OMA; GSNFFAI; -.
DR PhylomeDB; P0AF40; -.
DR BioCyc; EcoCyc:EG11395-MON; -.
DR PRO; PR:P0AF40; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IDA:EcoCyc.
DR InterPro; IPR009867; DUF1422.
DR Pfam; PF07226; DUF1422; 1.
PE 1: Evidence at protein level;
KW Cell inner membrane; Cell membrane; Membrane; Reference proteome;
KW Transmembrane; Transmembrane helix.
FT CHAIN 1..119
FT /note="Inner membrane protein YijD"
FT /id="PRO_0000169698"
FT TOPO_DOM 1..8
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 9..28
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 29..31
FT /note="Periplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 32..50
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 51..61
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 62..84
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 85..88
FT /note="Periplasmic"
FT /evidence="ECO:0000255"
FT TRANSMEM 89..108
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TOPO_DOM 109..119
FT /note="Cytoplasmic"
FT /evidence="ECO:0000255, ECO:0000269|PubMed:15919996"
FT CONFLICT 13
FT /note="L -> LL (in Ref. 1; CAA46824)"
FT /evidence="ECO:0000305"
FT CONFLICT 94
FT /note="F -> L (in Ref. 1; CAA46824)"
FT /evidence="ECO:0000305"
FT CONFLICT 100..110
FT /note="VIMVFWIGAKM -> SLWCSGLARRW (in Ref. 1; CAA46824)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 119 AA; 13024 MW; 29177570EAF20F3B CRC64;
MKQANQDRGT LLLALVAGLS INGTFAALFS SIVPFSVFPI ISLVLTVYCL HQRYLNRTMP
VGLPGLAAAC FILGVLLYST VVRAEYPDIG SNFFPAVLSV IMVFWIGAKM RNRKQEVAE
