YJGA_ECOLI
ID YJGA_ECOLI Reviewed; 183 AA.
AC P0A8X0; P26650; Q2M672;
DT 07-JUN-2005, integrated into UniProtKB/Swiss-Prot.
DT 07-JUN-2005, sequence version 1.
DT 03-AUG-2022, entry version 113.
DE RecName: Full=UPF0307 protein YjgA;
DE AltName: Full=x96 protein;
GN Name=yjgA; OrderedLocusNames=b4234, JW4193;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RA Rodriguez-Sainz M.C., Moreno F.;
RT "Nucleotide sequence and polypeptide product of x96, a gene mapping at min
RT 96 of the Escherichia coli genetic map.";
RL Submitted (JUN-1992) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=K12;
RX PubMed=8604133; DOI=10.1006/jmbi.1996.0103;
RA Murayama N., Shimizu H., Takiguchi S., Baba Y., Amino H., Horiuchi T.,
RA Sekimizu K., Miki T.;
RT "Evidence for involvement of Escherichia coli genes pmbA, csrA and a
RT previously unrecognized gene tldD, in the control of DNA gyrase by letD
RT (ccdB) of sex factor F.";
RL J. Mol. Biol. 256:483-502(1996).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=7610040; DOI=10.1093/nar/23.12.2105;
RA Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.;
RT "Analysis of the Escherichia coli genome VI: DNA sequence of the region
RT from 92.8 through 100 minutes.";
RL Nucleic Acids Res. 23:2105-2119(1995).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [6]
RP IDENTIFICATION BY MASS SPECTROMETRY, SUBCELLULAR LOCATION, AND ASSOCIATION
RP WITH THE 50S RIBOSOMAL SUBUNIT.
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=16980477; DOI=10.1128/jb.00444-06;
RA Jiang M., Datta K., Walker A., Strahler J., Bagamasbad P., Andrews P.C.,
RA Maddock J.R.;
RT "The Escherichia coli GTPase CgtAE is involved in late steps of large
RT ribosome assembly.";
RL J. Bacteriol. 188:6757-6770(2006).
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000269|PubMed:16980477}. Note=Has
CC been seen to comigrate with the 50S ribosomal subunit in sucrose
CC gradients.
CC -!- SIMILARITY: Belongs to the UPF0307 family. {ECO:0000305}.
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DR EMBL; M95096; AAA24760.1; -; Genomic_DNA.
DR EMBL; D44452; BAA07914.1; -; Genomic_DNA.
DR EMBL; U14003; AAA97131.1; -; Genomic_DNA.
DR EMBL; U00096; AAC77191.1; -; Genomic_DNA.
DR EMBL; AP009048; BAE78234.1; -; Genomic_DNA.
DR PIR; S56460; S56460.
DR RefSeq; NP_418655.1; NC_000913.3.
DR RefSeq; WP_000166270.1; NZ_STEB01000013.1.
DR PDB; 7BL5; EM; 3.30 A; 8=1-183.
DR PDBsum; 7BL5; -.
DR AlphaFoldDB; P0A8X0; -.
DR SMR; P0A8X0; -.
DR BioGRID; 4260635; 15.
DR BioGRID; 853040; 1.
DR DIP; DIP-47895N; -.
DR IntAct; P0A8X0; 11.
DR STRING; 511145.b4234; -.
DR jPOST; P0A8X0; -.
DR PaxDb; P0A8X0; -.
DR PRIDE; P0A8X0; -.
DR EnsemblBacteria; AAC77191; AAC77191; b4234.
DR EnsemblBacteria; BAE78234; BAE78234; BAE78234.
DR GeneID; 66671849; -.
DR GeneID; 948751; -.
DR KEGG; ecj:JW4193; -.
DR KEGG; eco:b4234; -.
DR PATRIC; fig|511145.12.peg.4365; -.
DR EchoBASE; EB1382; -.
DR eggNOG; COG3028; Bacteria.
DR HOGENOM; CLU_106757_2_0_6; -.
DR InParanoid; P0A8X0; -.
DR OMA; QMQFVGK; -.
DR PhylomeDB; P0A8X0; -.
DR BioCyc; EcoCyc:EG11410-MON; -.
DR PRO; PR:P0A8X0; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0005829; C:cytosol; IDA:EcoCyc.
DR CDD; cd16331; YjgA-like; 1.
DR Gene3D; 1.10.60.30; -; 2.
DR HAMAP; MF_00765; UPF0307; 1.
DR InterPro; IPR023153; PSPTO4464-like_dom_sf.
DR InterPro; IPR006839; Ribosome-assoc_YjgA.
DR PANTHER; PTHR38101; PTHR38101; 1.
DR Pfam; PF04751; DUF615; 1.
DR PIRSF; PIRSF016183; UCP016183; 1.
DR SUPFAM; SSF158710; SSF158710; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Cytoplasm; Reference proteome.
FT CHAIN 1..183
FT /note="UPF0307 protein YjgA"
FT /id="PRO_0000208213"
FT HELIX 29..47
FT /evidence="ECO:0007829|PDB:7BL5"
FT HELIX 51..54
FT /evidence="ECO:0007829|PDB:7BL5"
FT HELIX 61..72
FT /evidence="ECO:0007829|PDB:7BL5"
FT HELIX 75..90
FT /evidence="ECO:0007829|PDB:7BL5"
FT HELIX 95..104
FT /evidence="ECO:0007829|PDB:7BL5"
FT HELIX 109..126
FT /evidence="ECO:0007829|PDB:7BL5"
FT STRAND 129..132
FT /evidence="ECO:0007829|PDB:7BL5"
FT HELIX 133..139
FT /evidence="ECO:0007829|PDB:7BL5"
FT HELIX 145..160
FT /evidence="ECO:0007829|PDB:7BL5"
FT HELIX 168..179
FT /evidence="ECO:0007829|PDB:7BL5"
SQ SEQUENCE 183 AA; 21359 MW; 069CF47719CD59CB CRC64;
MTKQPEDWLD DVPGDDIEDE DDEIIWVSKS EIKRDAEELK RLGAEIVDLG KNALDKIPLD
ADLRAAIELA QRIKMEGRRR QLQLIGKMLR QRDVEPIRQA LDKLKNRHNQ QVVLFHKLEN
LRDRLIDQGD DAIAEVLNLW PDADRQQLRT LIRNAKKEKE GNKPPKSARQ IFQYLRELAE
NEG
