ID   YJIP_ECOLI              Reviewed;         103 AA.
AC   P0DP21; P39387; P39388; Q2M5X5;
DT   10-MAY-2017, integrated into UniProtKB/Swiss-Prot.
DT   10-MAY-2017, sequence version 1.
DT   25-MAY-2022, entry version 14.
DE   RecName: Full=Putative inactive recombination-promoting nuclease-like protein YjiP;
GN   Name=yjiP; Synonyms=rpnD {ECO:0000303|PubMed:28096446};
GN   OrderedLocusNames=b4338, JW5953;
OS   Escherichia coli (strain K12).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Enterobacteriaceae; Escherichia.
OX   NCBI_TaxID=83333;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / MG1655 / ATCC 47076;
RX   PubMed=7610040; DOI=10.1093/nar/23.12.2105;
RA   Burland V.D., Plunkett G. III, Sofia H.J., Daniels D.L., Blattner F.R.;
RT   "Analysis of the Escherichia coli genome VI: DNA sequence of the region
RT   from 92.8 through 100 minutes.";
RL   Nucleic Acids Res. 23:2105-2119(1995).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / MG1655 / ATCC 47076;
RX   PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA   Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA   Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA   Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA   Shao Y.;
RT   "The complete genome sequence of Escherichia coli K-12.";
RL   Science 277:1453-1462(1997).
RN   [3]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX   PubMed=16738553; DOI=10.1038/msb4100049;
RA   Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA   Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT   "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT   and W3110.";
RL   Mol. Syst. Biol. 2:E1-E5(2006).
RN   [4]
RP   DISRUPTION PHENOTYPE.
RC   STRAIN=K12 / BW25113;
RX   PubMed=16385049; DOI=10.1128/jb.188.2.587-598.2006;
RA   Herzberg M., Kaye I.K., Peti W., Wood T.K.;
RT   "YdgG (TqsA) controls biofilm formation in Escherichia coli K-12 through
RT   autoinducer 2 transport.";
RL   J. Bacteriol. 188:587-598(2006).
RN   [5]
RP   FUNCTION.
RC   STRAIN=K12;
RX   PubMed=26162088; DOI=10.1371/journal.pone.0130813;
RA   Kingston A.W., Roussel-Rossin C., Dupont C., Raleigh E.A.;
RT   "Novel recA-independent horizontal gene transfer in Escherichia coli K-
RT   12.";
RL   PLoS ONE 10:E0130813-E0130813(2015).
RN   [6]
RP   ERRATUM OF PUBMED:26162088.
RX   PubMed=26618540; DOI=10.1371/journal.pone.0143991;
RA   Kingston A.W., Roussel-Rossin C., Dupont C., Raleigh E.A.;
RT   "Correction: Novel recA-independent horizontal gene transfer in Escherichia
RT   coli K-12.";
RL   PLoS ONE 10:E0143991-E0143991(2015).
RN   [7]
RP   FUNCTION.
RC   STRAIN=K12;
RX   PubMed=28096446; DOI=10.1128/jb.00787-16;
RA   Kingston A.W., Ponkratz C., Raleigh E.A.;
RT   "The Rpn (YhgA-like) proteins of Escherichia coli K-12 and their
RT   contribution to RecA-independent horizontal transfer.";
RL   J. Bacteriol. 0:0-0(2017).
CC   -!- FUNCTION: This pseudogene is the N-terminal fragment of low activity
CC       DNA endonuclease RpnD which probably yields 3'-hydroxyl ends (By
CC       similarity). The intact protein can be seen in this entry (AC B7NGZ6).
CC       Expression of the repaired protein increases the frequency of recA-
CC       independent recombination, but also decreases viability probably via
CC       DNA damage; in a RecA strain expression has no effect on viability but
CC       does induce the SOS repair response (PubMed:26162088, PubMed:26618540).
CC       May play a role in horizontal gene transfer (PubMed:26162088,
CC       PubMed:26618540, PubMed:28096446). {ECO:0000250|UniProtKB:P31667,
CC       ECO:0000269|PubMed:26162088, ECO:0000269|PubMed:26618540,
CC       ECO:0000269|PubMed:28096446}.
CC   -!- DISRUPTION PHENOTYPE: Decreases biofilm formation (PubMed:16385049).
CC       {ECO:0000269|PubMed:16385049}.
CC   -!- SIMILARITY: Belongs to the Rpn/YhgA-like nuclease family.
CC       {ECO:0000305}.
CC   -!- CAUTION: Could be the product of a pseudogene. Experiments were
CC       performed with a repaired version of the protein (AC B7NGZ6)
CC       (PubMed:26162088). {ECO:0000269|PubMed:26162088, ECO:0000305}.
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DR   EMBL; U14003; AAA97234.1; -; Genomic_DNA.
DR   EMBL; U00096; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   EMBL; AP009048; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   PIR; S56563; S56563.
DR   AlphaFoldDB; P0DP21; -.
DR   EchoBASE; EB2465; -.
DR   Proteomes; UP000000318; Chromosome.
DR   Proteomes; UP000000625; Chromosome.
DR   InterPro; IPR010106; RpnA.
DR   InterPro; IPR006842; Transposase_31.
DR   Pfam; PF04754; Transposase_31; 1.
DR   TIGRFAMs; TIGR01784; T_den_put_tspse; 1.
PE   5: Uncertain;
KW   Reference proteome.
FT   CHAIN           1..103
FT                   /note="Putative inactive recombination-promoting nuclease-
FT                   like protein YjiP"
FT                   /id="PRO_0000169794"
SQ   SEQUENCE   103 AA;  12078 MW;  DE5B2EBB08172BC0 CRC64;
     MTNFTTSTPH DALFKTFLTH PDTARDFMEI HLPKDLRELC DLDSLKLESA SFVDEKLRAL
     HSDILWSVKT REGDGYIYVV IEHQSREDIH MAFRLMRYSM AVM