YL1_ORYSJ
ID YL1_ORYSJ Reviewed; 165 AA.
AC Q0E3V2; Q67IU2;
DT 10-OCT-2018, integrated into UniProtKB/Swiss-Prot.
DT 17-OCT-2006, sequence version 1.
DT 03-AUG-2022, entry version 88.
DE RecName: Full=Protein YELLOW LEAF 1, choloroplastic {ECO:0000303|PubMed:27585744};
DE Flags: Precursor;
GN Name=YL1 {ECO:0000303|PubMed:27585744};
GN OrderedLocusNames=Os02g0152900 {ECO:0000312|EMBL:BAF07836.1},
GN LOC_Os02g05890 {ECO:0000305};
GN ORFNames=P0463E12.11 {ECO:0000312|EMBL:BAD38599.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [5]
RP FUNCTION, INTERACTION WITH ATPB, SUBCELLULAR LOCATION, TISSUE SPECIFICITY,
RP INDUCTION BY LIGHT, DISRUPTION PHENOTYPE, AND MUTAGENESIS OF PRO-108.
RX PubMed=27585744; DOI=10.1038/srep32295;
RA Chen F., Dong G., Wu L., Wang F., Yang X., Ma X., Wang H., Wu J., Zhang Y.,
RA Wang H., Qian Q., Yu Y.;
RT "A nucleus-encoded chloroplast protein YL1 is involved in chloroplast
RT development and efficient biogenesis of chloroplast ATP synthase in rice.";
RL Sci. Rep. 6:32295-32295(2016).
CC -!- FUNCTION: Required for photosynthetic protein complex assembly in
CC chloroplast thylakoid membranes during leaf development
CC (PubMed:27585744). Maintains the abundance of the core protein complex
CC PsaA-PsaB of photosystem I (PSI) in the thylakoid membrane
CC (PubMed:27585744). May play a role in the efficient biogenesis of the
CC chloroplast ATP synthase complex, possibly by interacting with the beta
CC subunit atpB (PubMed:27585744). {ECO:0000269|PubMed:27585744}.
CC -!- SUBUNIT: Interacts with atpB. {ECO:0000269|PubMed:27585744}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000269|PubMed:27585744}.
CC -!- TISSUE SPECIFICITY: Highly expressed in leaves (PubMed:27585744).
CC Expressed in leaf sheaths (PubMed:27585744). Expressed at low levels in
CC stems (PubMed:27585744). {ECO:0000269|PubMed:27585744}.
CC -!- INDUCTION: Induced by light in dark-grown seedllings.
CC {ECO:0000269|PubMed:27585744}.
CC -!- DISRUPTION PHENOTYPE: Yellow-leaf phenotype due to reduced chlorophyll
CC content. {ECO:0000269|PubMed:27585744}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAD38599.1; Type=Erroneous initiation; Note=Truncated N-terminus.; Evidence={ECO:0000305};
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DR EMBL; AP007224; BAD38599.1; ALT_INIT; Genomic_DNA.
DR EMBL; AP008208; BAF07836.1; -; Genomic_DNA.
DR EMBL; AP014958; BAS77023.1; -; Genomic_DNA.
DR EMBL; AK061136; BAG87753.1; -; mRNA.
DR RefSeq; XP_015623885.1; XM_015768399.1.
DR AlphaFoldDB; Q0E3V2; -.
DR STRING; 4530.OS02T0152900-01; -.
DR PaxDb; Q0E3V2; -.
DR PRIDE; Q0E3V2; -.
DR EnsemblPlants; Os02t0152900-01; Os02t0152900-01; Os02g0152900.
DR GeneID; 4328331; -.
DR Gramene; Os02t0152900-01; Os02t0152900-01; Os02g0152900.
DR KEGG; osa:4328331; -.
DR eggNOG; ENOG502S1SV; Eukaryota.
DR HOGENOM; CLU_104365_1_0_1; -.
DR InParanoid; Q0E3V2; -.
DR OMA; QFIGYNI; -.
DR OrthoDB; 1617396at2759; -.
DR Proteomes; UP000000763; Chromosome 2.
DR Proteomes; UP000059680; Chromosome 2.
DR GO; GO:0009507; C:chloroplast; IDA:UniProtKB.
DR GO; GO:0009658; P:chloroplast organization; IBA:GO_Central.
DR GO; GO:0033614; P:chloroplast proton-transporting ATP synthase complex assembly; IMP:UniProtKB.
DR GO; GO:0010027; P:thylakoid membrane organization; IMP:UniProtKB.
DR InterPro; IPR040299; RF2K-like.
DR PANTHER; PTHR34938; PTHR34938; 1.
PE 1: Evidence at protein level;
KW Chloroplast; Plastid; Reference proteome; Transit peptide.
FT TRANSIT 1..51
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 52..165
FT /note="Protein YELLOW LEAF 1, choloroplastic"
FT /id="PRO_0000445240"
FT REGION 71..118
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 71..90
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT MUTAGEN 108
FT /note="P->S: In yl1-1; yellow-leaf phenotype due to reduced
FT chlorophyll content; abnormal chloroplast morphology, and
FT decreased photochemical efficiency; early flowering and
FT senescence; reduced plant height, tiller number, and grain
FT weight."
FT /evidence="ECO:0000269|PubMed:27585744"
SQ SEQUENCE 165 AA; 17089 MW; 16BE4FE7132D72DB CRC64;
MPPLATMSSP GSLLLLTPAV YQGIGRNRGG QSQEGQSISS SRSLKTKLSV SARAVSSCEA
SMRITCCANQ TQTARRKSFS GPTSPPSGSV KEKVRSPKLD DGGTGFPPFR FGGGGGGGGG
GGSNSAGGFI LFVIVLLLDY LREFERNLQN GTRRGSDYDN GLAPQ
