YLMG2_ARATH
ID YLMG2_ARATH Reviewed; 251 AA.
AC Q9C595;
DT 24-JUN-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-JUN-2001, sequence version 1.
DT 03-AUG-2022, entry version 123.
DE RecName: Full=YlmG homolog protein 2, chloroplastic {ECO:0000305};
DE Short=AtYLMG2 {ECO:0000303|PubMed:20359373};
DE AltName: Full=YGGT family protein YLMG2 {ECO:0000305};
DE Flags: Precursor;
GN Name=YLMG2 {ECO:0000303|PubMed:20359373};
GN Synonyms=YGGT-A {ECO:0000303|PubMed:18593701};
GN OrderedLocusNames=At5g21920 {ECO:0000312|Araport:AT5G21920};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702 {ECO:0000312|Proteomes:UP000006548};
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130714; DOI=10.1038/35048507;
RA Tabata S., Kaneko T., Nakamura Y., Kotani H., Kato T., Asamizu E.,
RA Miyajima N., Sasamoto S., Kimura T., Hosouchi T., Kawashima K., Kohara M.,
RA Matsumoto M., Matsuno A., Muraki A., Nakayama S., Nakazaki N., Naruo K.,
RA Okumura S., Shinpo S., Takeuchi C., Wada T., Watanabe A., Yamada M.,
RA Yasuda M., Sato S., de la Bastide M., Huang E., Spiegel L., Gnoj L.,
RA O'Shaughnessy A., Preston R., Habermann K., Murray J., Johnson D.,
RA Rohlfing T., Nelson J., Stoneking T., Pepin K., Spieth J., Sekhon M.,
RA Armstrong J., Becker M., Belter E., Cordum H., Cordes M., Courtney L.,
RA Courtney W., Dante M., Du H., Edwards J., Fryman J., Haakensen B.,
RA Lamar E., Latreille P., Leonard S., Meyer R., Mulvaney E., Ozersky P.,
RA Riley A., Strowmatt C., Wagner-McPherson C., Wollam A., Yoakum M., Bell M.,
RA Dedhia N., Parnell L., Shah R., Rodriguez M., Hoon See L., Vil D.,
RA Baker J., Kirchoff K., Toth K., King L., Bahret A., Miller B., Marra M.A.,
RA Martienssen R., McCombie W.R., Wilson R.K., Murphy G., Bancroft I.,
RA Volckaert G., Wambutt R., Duesterhoeft A., Stiekema W., Pohl T.,
RA Entian K.-D., Terryn N., Hartley N., Bent E., Johnson S., Langham S.-A.,
RA McCullagh B., Robben J., Grymonprez B., Zimmermann W., Ramsperger U.,
RA Wedler H., Balke K., Wedler E., Peters S., van Staveren M., Dirkse W.,
RA Mooijman P., Klein Lankhorst R., Weitzenegger T., Bothe G., Rose M.,
RA Hauf J., Berneiser S., Hempel S., Feldpausch M., Lamberth S.,
RA Villarroel R., Gielen J., Ardiles W., Bents O., Lemcke K., Kolesov G.,
RA Mayer K.F.X., Rudd S., Schoof H., Schueller C., Zaccaria P., Mewes H.-W.,
RA Bevan M., Fransz P.F.;
RT "Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana.";
RL Nature 408:823-826(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=11910074; DOI=10.1126/science.1071006;
RA Seki M., Narusaka M., Kamiya A., Ishida J., Satou M., Sakurai T.,
RA Nakajima M., Enju A., Akiyama K., Oono Y., Muramatsu M., Hayashizaki Y.,
RA Kawai J., Carninci P., Itoh M., Ishii Y., Arakawa T., Shibata K.,
RA Shinagawa A., Shinozaki K.;
RT "Functional annotation of a full-length Arabidopsis cDNA collection.";
RL Science 296:141-145(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [5]
RP FUNCTION, AND DISRUPTION PHENOTYPE.
RX PubMed=18593701; DOI=10.1074/jbc.m803869200;
RA Lezhneva L., Kuras R., Ephritikhine G., de Vitry C.;
RT "A novel pathway of cytochrome c biogenesis is involved in the assembly of
RT the cytochrome b6f complex in arabidopsis chloroplasts.";
RL J. Biol. Chem. 283:24608-24616(2008).
RN [6]
RP GENE FAMILY.
RX PubMed=20359373; DOI=10.1186/1471-2229-10-57;
RA Kabeya Y., Nakanishi H., Suzuki K., Ichikawa T., Kondou Y., Matsui M.,
RA Miyagishima S.Y.;
RT "The YlmG protein has a conserved function related to the distribution of
RT nucleoids in chloroplasts and cyanobacteria.";
RL BMC Plant Biol. 10:57-57(2010).
CC -!- FUNCTION: Not required for the biogenesis and accumulation of native
CC cytochrome b6 in the thylakoid membrane. Not functionally involved in
CC the pathway for covalent binding of the c-type heme to cytochrome b6.
CC {ECO:0000269|PubMed:18593701}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane
CC {ECO:0000250|UniProtKB:Q9SRS3}; Multi-pass membrane protein
CC {ECO:0000255}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=1;
CC Comment=A number of isoforms are produced. According to EST
CC sequences. {ECO:0000305};
CC Name=1;
CC IsoId=Q9C595-1; Sequence=Displayed;
CC -!- DISRUPTION PHENOTYPE: No visible phenotype under normal growth
CC conditions. {ECO:0000269|PubMed:18593701}.
CC -!- SIMILARITY: Belongs to the YggT family. {ECO:0000305}.
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DR EMBL; AC140977; AAO73904.1; -; Genomic_DNA.
DR EMBL; AL589883; CAC34485.1; -; Genomic_DNA.
DR EMBL; CP002688; AED92954.1; -; Genomic_DNA.
DR EMBL; AK118444; BAC43053.1; -; mRNA.
DR EMBL; BT005265; AAO63329.1; -; mRNA.
DR RefSeq; NP_680180.1; NM_147875.5. [Q9C595-1]
DR AlphaFoldDB; Q9C595; -.
DR IntAct; Q9C595; 26.
DR STRING; 3702.AT5G21920.1; -.
DR PaxDb; Q9C595; -.
DR PRIDE; Q9C595; -.
DR EnsemblPlants; AT5G21920.1; AT5G21920.1; AT5G21920. [Q9C595-1]
DR GeneID; 832252; -.
DR Gramene; AT5G21920.1; AT5G21920.1; AT5G21920. [Q9C595-1]
DR KEGG; ath:AT5G21920; -.
DR Araport; AT5G21920; -.
DR TAIR; locus:504956451; AT5G21920.
DR eggNOG; ENOG502S4TK; Eukaryota.
DR InParanoid; Q9C595; -.
DR OMA; ITKCELP; -.
DR OrthoDB; 1546310at2759; -.
DR PhylomeDB; Q9C595; -.
DR PRO; PR:Q9C595; -.
DR Proteomes; UP000006548; Chromosome 5.
DR ExpressionAtlas; Q9C595; baseline and differential.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0010020; P:chloroplast fission; IBA:GO_Central.
DR GO; GO:0090143; P:nucleoid organization; IBA:GO_Central.
DR InterPro; IPR003425; CCB3/YggT.
DR PANTHER; PTHR33219; PTHR33219; 1.
DR Pfam; PF02325; YGGT; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Chloroplast; Membrane; Plastid; Reference proteome;
KW Thylakoid; Transit peptide; Transmembrane; Transmembrane helix.
FT TRANSIT 1..51
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 52..251
FT /note="YlmG homolog protein 2, chloroplastic"
FT /evidence="ECO:0000255"
FT /id="PRO_0000433268"
FT TRANSMEM 119..139
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 183..203
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 232..251
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 251 AA; 27266 MW; DFCD5EBC8BFE2D67 CRC64;
MEASANEPAM KSLKSNPSGP IPNFFVSLSS AFTQTPLVRS NKPNLLLLPP VADSVKLIQD
FHQSLISATE KFKGFLHSLA SKNPLFQEAV RLSSEFHILC DEIRLRNTTR VRFAMSNHGF
AAVLPGDSVA GLVVANGLIN FLNIYNTILV VRLVLTWFPS APPAIVNPLS TLCDPYLNIF
RGFIPPLGGL DLSPILAFLV LNAFTSSAMA LPCELPSADG AVSPASSETK WVRRRRLSSH
KDHRPSSASM T
