YLXQ_BACSU
ID YLXQ_BACSU Reviewed; 100 AA.
AC P32729;
DT 01-OCT-1993, integrated into UniProtKB/Swiss-Prot.
DT 01-OCT-1993, sequence version 1.
DT 03-AUG-2022, entry version 125.
DE RecName: Full=Probable ribosomal protein YlxQ;
GN Name=rplGA; Synonyms=ylxQ, ymxC; OrderedLocusNames=BSU16620;
OS Bacillus subtilis (strain 168).
OC Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX NCBI_TaxID=224308;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=168;
RX PubMed=8491709; DOI=10.1128/jb.175.10.2880-2887.1993;
RA Shazand K., Tucker J., Grunberg-Manago M., Rabinowitz J.C., Leighton T.;
RT "Similar organization of the nusA-infB operon in Bacillus subtilis and
RT Escherichia coli.";
RL J. Bacteriol. 175:2880-2887(1993).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=168;
RX PubMed=9384377; DOI=10.1038/36786;
RA Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V.,
RA Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R.,
RA Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S.,
RA Bruschi C.V., Caldwell B., Capuano V., Carter N.M., Choi S.-K.,
RA Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F.,
RA Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D.,
RA Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M.,
RA Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P.,
RA Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K.,
RA Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S.,
RA Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y.,
RA Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G.,
RA Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M.,
RA Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y.,
RA Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
RA Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A.,
RA Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M.,
RA Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S.,
RA Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E.,
RA Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA Yoshikawa H., Danchin A.;
RT "The complete genome sequence of the Gram-positive bacterium Bacillus
RT subtilis.";
RL Nature 390:249-256(1997).
RN [3]
RP X-RAY CRYSTALLOGRAPHY (1.55 ANGSTROMS), FUNCTION, AND RNA-BINDING.
RX PubMed=22355167; DOI=10.1261/rna.031518.111;
RA Baird N.J., Zhang J., Hamma T., Ferre-D'Amare A.R.;
RT "YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-
RT loops.";
RL RNA 18:759-770(2012).
CC -!- FUNCTION: RNA-binding protein that recognizes the K-turn motif present
CC in ribosomal RNA, but also in box C/D and box C'/D' sRNAs.
CC {ECO:0000269|PubMed:22355167}.
CC -!- SIMILARITY: Belongs to the eukaryotic ribosomal protein eL8 family.
CC {ECO:0000305}.
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DR EMBL; Z18631; CAA79233.1; -; Genomic_DNA.
DR EMBL; AL009126; CAB13535.1; -; Genomic_DNA.
DR PIR; E36905; E36905.
DR RefSeq; NP_389544.1; NC_000964.3.
DR RefSeq; WP_003220946.1; NZ_JNCM01000035.1.
DR PDB; 3V7Q; X-ray; 1.55 A; A/B/C=2-100.
DR PDBsum; 3V7Q; -.
DR AlphaFoldDB; P32729; -.
DR SMR; P32729; -.
DR STRING; 224308.BSU16620; -.
DR PaxDb; P32729; -.
DR EnsemblBacteria; CAB13535; CAB13535; BSU_16620.
DR GeneID; 64303555; -.
DR GeneID; 939626; -.
DR KEGG; bsu:BSU16620; -.
DR PATRIC; fig|224308.179.peg.1803; -.
DR eggNOG; COG1358; Bacteria.
DR InParanoid; P32729; -.
DR OMA; MSEVEYI; -.
DR PhylomeDB; P32729; -.
DR BioCyc; BSUB:BSU16620-MON; -.
DR PRO; PR:P32729; -.
DR Proteomes; UP000001570; Chromosome.
DR GO; GO:0022625; C:cytosolic large ribosomal subunit; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR GO; GO:0042254; P:ribosome biogenesis; IEA:InterPro.
DR Gene3D; 3.30.1330.30; -; 1.
DR InterPro; IPR039109; L30/L30e/YlxQ.
DR InterPro; IPR029064; L30e-like.
DR InterPro; IPR000231; Ribosomal_L30e.
DR InterPro; IPR004038; Ribosomal_L7Ae/L30e/S12e/Gad45.
DR InterPro; IPR004037; Ribosomal_L7Ae_CS.
DR PANTHER; PTHR11449; PTHR11449; 1.
DR PANTHER; PTHR11449:SF1; PTHR11449:SF1; 1.
DR Pfam; PF01248; Ribosomal_L7Ae; 1.
DR SUPFAM; SSF55315; SSF55315; 1.
DR PROSITE; PS01082; RIBOSOMAL_L7AE; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome; Ribonucleoprotein; Ribosomal protein;
KW RNA-binding.
FT CHAIN 1..100
FT /note="Probable ribosomal protein YlxQ"
FT /id="PRO_0000136786"
FT HELIX 6..15
FT /evidence="ECO:0007829|PDB:3V7Q"
FT STRAND 19..22
FT /evidence="ECO:0007829|PDB:3V7Q"
FT HELIX 23..31
FT /evidence="ECO:0007829|PDB:3V7Q"
FT STRAND 36..41
FT /evidence="ECO:0007829|PDB:3V7Q"
FT HELIX 46..58
FT /evidence="ECO:0007829|PDB:3V7Q"
FT STRAND 63..67
FT /evidence="ECO:0007829|PDB:3V7Q"
FT HELIX 69..75
FT /evidence="ECO:0007829|PDB:3V7Q"
FT STRAND 82..86
FT /evidence="ECO:0007829|PDB:3V7Q"
FT HELIX 89..98
FT /evidence="ECO:0007829|PDB:3V7Q"
SQ SEQUENCE 100 AA; 11054 MW; 44EBC8D4A8603F8E CRC64;
MSGMEWFPLL GLANRARKVV SGEDLVIKEI RNARAKLVLL TEDASSNTAK KVTDKCNYYK
VPYKKVESRA VLGRSIGKEA RVVVAVTDQG FANKLISLLD
