YMF16_ARATH
ID YMF16_ARATH Reviewed; 280 AA.
AC P93312; A7KNJ1; Q36322;
DT 01-MAR-2004, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2004, sequence version 2.
DT 03-AUG-2022, entry version 123.
DE RecName: Full=Uncharacterized tatC-like protein ymf16;
DE AltName: Full=ORFX;
GN Name=YMF16; Synonyms=MTT2; OrderedLocusNames=AtMg00570;
OS Arabidopsis thaliana (Mouse-ear cress).
OG Mitochondrion.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=8277947; DOI=10.1007/bf00277349;
RA Suenkel S., Brennicke A., Knoop V.;
RT "RNA editing of a conserved reading frame in plant mitochondria increases
RT its similarity to two overlapping reading frames in Escherichia coli.";
RL Mol. Gen. Genet. 242:65-72(1994).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. C24;
RX PubMed=8988169; DOI=10.1038/ng0197-57;
RA Unseld M., Marienfeld J.R., Brandt P., Brennicke A.;
RT "The mitochondrial genome of Arabidopsis thaliana contains 57 genes in
RT 366,924 nucleotides.";
RL Nat. Genet. 15:57-61(1997).
RN [3]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA], AND RNA EDITING.
RX PubMed=10611383; DOI=10.1073/pnas.96.26.15324;
RA Giege P., Brennicke A.;
RT "RNA editing in Arabidopsis mitochondria effects 441 C to U changes in
RT ORFs.";
RL Proc. Natl. Acad. Sci. U.S.A. 96:15324-15329(1999).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA] (AT2G07716).
RC STRAIN=cv. Columbia;
RX PubMed=10617197; DOI=10.1038/45471;
RA Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D.,
RA Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E., Feldblyum T.V.,
RA Buell C.R., Ketchum K.A., Lee J.J., Ronning C.M., Koo H.L., Moffat K.S.,
RA Cronin L.A., Shen M., Pai G., Van Aken S., Umayam L., Tallon L.J.,
RA Gill J.E., Adams M.D., Carrera A.J., Creasy T.H., Goodman H.M.,
RA Somerville C.R., Copenhaver G.P., Preuss D., Nierman W.C., White O.,
RA Eisen J.A., Salzberg S.L., Fraser C.M., Venter J.C.;
RT "Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.";
RL Nature 402:761-768(1999).
RN [5]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 11-265, AND RNA EDITING.
RC STRAIN=cv. Columbia, and cv. Landsberg erecta; TISSUE=Rosette leaf;
RX PubMed=17565941; DOI=10.1534/genetics.107.073585;
RA Bentolila S., Elliott L.E., Hanson M.R.;
RT "Genetic architecture of mitochondrial editing in Arabidopsis thaliana.";
RL Genetics 178:1693-1708(2008).
CC -!- SUBCELLULAR LOCATION: Mitochondrion membrane {ECO:0000305}; Multi-pass
CC membrane protein {ECO:0000305}.
CC -!- RNA EDITING: Modified_positions=14 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 43 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 48 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 49 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 52 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 61 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 115 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 116 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 120 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 121 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 130 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 131 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 132 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 141 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 163 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 174 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 188 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 209 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 216 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 228 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941}, 243 {ECO:0000269|PubMed:10611383,
CC ECO:0000269|PubMed:17565941};
CC -!- MISCELLANEOUS: A stretch of 270 kb of the mitochondrial genome is
CC duplicated within the centromere of chromosome 2 resulting in the
CC duplication of the gene. The expression of the duplicated gene
CC (At2g07716) is not demonstrated. It is also probably not RNA edited and
CC therefore differs in all the positions known to be edited.
CC -!- SIMILARITY: Belongs to the TatC family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AC007729; Type=Frameshift; Evidence={ECO:0000305};
CC Sequence=CAA51193.1; Type=Frameshift; Evidence={ECO:0000305};
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; X72616; CAA51193.1; ALT_FRAME; Genomic_DNA.
DR EMBL; Y08501; CAA69741.3; ALT_SEQ; Genomic_DNA.
DR EMBL; AC007729; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; EF488934; ABS50646.1; -; mRNA.
DR EMBL; EF488935; ABS50647.1; -; mRNA.
DR PIR; S46330; S46330.
DR RefSeq; NP_085517.1; NC_001284.2.
DR AlphaFoldDB; P93312; -.
DR SMR; P93312; -.
DR STRING; 3702.ATMG00570.1; -.
DR PRIDE; P93312; -.
DR Araport; ATMG00570; -.
DR eggNOG; ENOG502RS7A; Eukaryota.
DR HOGENOM; CLU_084965_0_0_1; -.
DR InParanoid; P93312; -.
DR OrthoDB; 1038718at2759; -.
DR PRO; PR:P93312; -.
DR Proteomes; UP000006548; Mitochondrion (cv. C24).
DR ExpressionAtlas; P93312; baseline and differential.
DR Genevisible; P93312; AT.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0031966; C:mitochondrial membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0033281; C:TAT protein transport complex; IBA:GO_Central.
DR GO; GO:0009977; F:proton motive force dependent protein transmembrane transporter activity; IBA:GO_Central.
DR GO; GO:0065002; P:intracellular protein transmembrane transport; IBA:GO_Central.
DR GO; GO:0043953; P:protein transport by the Tat complex; IBA:GO_Central.
DR InterPro; IPR002033; TatC.
DR PANTHER; PTHR30371; PTHR30371; 1.
DR Pfam; PF00902; TatC; 1.
DR PRINTS; PR01840; TATCFAMILY.
DR TIGRFAMs; TIGR00945; tatC; 1.
PE 2: Evidence at transcript level;
KW Membrane; Mitochondrion; Reference proteome; RNA editing; Transmembrane;
KW Transmembrane helix.
FT CHAIN 1..280
FT /note="Uncharacterized tatC-like protein ymf16"
FT /id="PRO_0000098104"
FT TRANSMEM 46..66
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 81..101
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 114..134
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 137..157
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 170..190
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 225..245
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 258..280
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 265..280
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT CONFLICT 269
FT /note="S -> R (in Ref. 1; CAA51193)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 280 AA; 32560 MW; 05D47C8B357D9CF6 CRC64;
MNYLYISYEF NFALETILGE VRIRSVRILI GLGLTWFTCY WFSEELIFLL ALPFLTLPFD
LYFVCTQLTE AFSTFVATSS IACSYFVFPL ISYQIWCFLI PSCYGEQRTK YNRFFYLSGF
CFFLFLFLTL SWVVPNVWHF LYFVGATSTN SLMIKLQPKI YDYIMLTVRI SFISSVCSQV
PVIVICLLEP RGLSLETFTN NRRFLMVFSL LTAALFTPPD IWCQIVACFL ISLIIELAIF
VALIVQVREE GWTSGMRESG SIEKKNKSSP PPRTWQSNYQ
