YMG11_ARATH
ID YMG11_ARATH Reviewed; 232 AA.
AC Q9SRS3; Q8L939;
DT 24-JUN-2015, integrated into UniProtKB/Swiss-Prot.
DT 01-MAY-2000, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=YlmG homolog protein 1-1, chloroplastic {ECO:0000305};
DE Short=AtYLMG1-1 {ECO:0000303|PubMed:20359373};
DE AltName: Full=YGGT family protein YLMG1-1 {ECO:0000305};
DE Flags: Precursor;
GN Name=YLMG1-1 {ECO:0000303|PubMed:20359373}; Synonyms=YGGT-C {ECO:0000305};
GN OrderedLocusNames=At3g07430 {ECO:0000312|Araport:AT3G07430};
GN ORFNames=F21O3.14 {ECO:0000312|EMBL:AAF02150.1};
OS Arabidopsis thaliana (Mouse-ear cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis.
OX NCBI_TaxID=3702;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Columbia;
RX PubMed=11130713; DOI=10.1038/35048706;
RA Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B.,
RA Valle G., Bloecker H., Perez-Alonso M., Obermaier B., Delseny M.,
RA Boutry M., Grivell L.A., Mache R., Puigdomenech P., De Simone V.,
RA Choisne N., Artiguenave F., Robert C., Brottier P., Wincker P.,
RA Cattolico L., Weissenbach J., Saurin W., Quetier F., Schaefer M.,
RA Mueller-Auer S., Gabel C., Fuchs M., Benes V., Wurmbach E., Drzonek H.,
RA Erfle H., Jordan N., Bangert S., Wiedelmann R., Kranz H., Voss H.,
RA Holland R., Brandt P., Nyakatura G., Vezzi A., D'Angelo M., Pallavicini A.,
RA Toppo S., Simionati B., Conrad A., Hornischer K., Kauer G., Loehnert T.-H.,
RA Nordsiek G., Reichelt J., Scharfe M., Schoen O., Bargues M., Terol J.,
RA Climent J., Navarro P., Collado C., Perez-Perez A., Ottenwaelder B.,
RA Duchemin D., Cooke R., Laudie M., Berger-Llauro C., Purnelle B., Masuy D.,
RA de Haan M., Maarse A.C., Alcaraz J.-P., Cottet A., Casacuberta E.,
RA Monfort A., Argiriou A., Flores M., Liguori R., Vitale D., Mannhaupt G.,
RA Haase D., Schoof H., Rudd S., Zaccaria P., Mewes H.-W., Mayer K.F.X.,
RA Kaul S., Town C.D., Koo H.L., Tallon L.J., Jenkins J., Rooney T., Rizzo M.,
RA Walts A., Utterback T., Fujii C.Y., Shea T.P., Creasy T.H., Haas B.,
RA Maiti R., Wu D., Peterson J., Van Aken S., Pai G., Militscher J.,
RA Sellers P., Gill J.E., Feldblyum T.V., Preuss D., Lin X., Nierman W.C.,
RA Salzberg S.L., White O., Venter J.C., Fraser C.M., Kaneko T., Nakamura Y.,
RA Sato S., Kato T., Asamizu E., Sasamoto S., Kimura T., Idesawa K.,
RA Kawashima K., Kishida Y., Kiyokawa C., Kohara M., Matsumoto M., Matsuno A.,
RA Muraki A., Nakayama S., Nakazaki N., Shinpo S., Takeuchi C., Wada T.,
RA Watanabe A., Yamada M., Yasuda M., Tabata S.;
RT "Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.";
RL Nature 408:820-822(2000).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Columbia;
RX PubMed=27862469; DOI=10.1111/tpj.13415;
RA Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S.,
RA Town C.D.;
RT "Araport11: a complete reannotation of the Arabidopsis thaliana reference
RT genome.";
RL Plant J. 89:789-804(2017).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Columbia;
RX PubMed=14593172; DOI=10.1126/science.1088305;
RA Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M.,
RA Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G.,
RA Liu S.X., Lam B., Sakano H., Wu T., Yu G., Miranda M., Quach H.L.,
RA Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C.,
RA Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J.,
RA Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A.,
RA Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C.,
RA Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X.,
RA Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M.,
RA Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K.,
RA Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A.,
RA Ecker J.R.;
RT "Empirical analysis of transcriptional activity in the Arabidopsis
RT genome.";
RL Science 302:842-846(2003).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RA Brover V.V., Troukhan M.E., Alexandrov N.A., Lu Y.-P., Flavell R.B.,
RA Feldmann K.A.;
RT "Full-length cDNA from Arabidopsis thaliana.";
RL Submitted (MAR-2002) to the EMBL/GenBank/DDBJ databases.
RN [5]
RP FUNCTION, AND SUBCELLULAR LOCATION.
RX PubMed=20359373; DOI=10.1186/1471-2229-10-57;
RA Kabeya Y., Nakanishi H., Suzuki K., Ichikawa T., Kondou Y., Matsui M.,
RA Miyagishima S.Y.;
RT "The YlmG protein has a conserved function related to the distribution of
RT nucleoids in chloroplasts and cyanobacteria.";
RL BMC Plant Biol. 10:57-57(2010).
CC -!- FUNCTION: Required for the proper distribution of nucleoids in
CC chloroplasts. The nucleoid partitioning by YLMG1-1 may be related to
CC chloroplast division processes. {ECO:0000269|PubMed:20359373}.
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast thylakoid membrane
CC {ECO:0000269|PubMed:20359373}; Multi-pass membrane protein
CC {ECO:0000255}. Note=Localizes in punctate structures on the thylakoid
CC membranes which are adjacent to a subset of nucleoids.
CC {ECO:0000269|PubMed:20359373}.
CC -!- MISCELLANEOUS: Plant over-expressing YLMG1-1 have impaired chloroplast
CC division leading to reduced number and enlarged chloroplasts in
CC mesophyll cells. Plants silencing YLMG1-1 show a pale green phenotype
CC in young emerging leaves and the basal part of expanding leaves.
CC {ECO:0000269|PubMed:20359373}.
CC -!- SIMILARITY: Belongs to the YggT family. {ECO:0000305}.
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DR EMBL; AC009853; AAF02150.1; -; Genomic_DNA.
DR EMBL; CP002686; AEE74542.1; -; Genomic_DNA.
DR EMBL; AY099847; AAM20698.1; -; mRNA.
DR EMBL; BT006263; AAP13371.1; -; mRNA.
DR EMBL; AY088651; AAM66973.1; -; mRNA.
DR RefSeq; NP_566307.1; NM_111622.3.
DR AlphaFoldDB; Q9SRS3; -.
DR STRING; 3702.AT3G07430.1; -.
DR PaxDb; Q9SRS3; -.
DR PRIDE; Q9SRS3; -.
DR ProteomicsDB; 242341; -.
DR DNASU; 819931; -.
DR EnsemblPlants; AT3G07430.1; AT3G07430.1; AT3G07430.
DR GeneID; 819931; -.
DR Gramene; AT3G07430.1; AT3G07430.1; AT3G07430.
DR KEGG; ath:AT3G07430; -.
DR Araport; AT3G07430; -.
DR TAIR; locus:2079656; AT3G07430.
DR eggNOG; ENOG502RXHG; Eukaryota.
DR HOGENOM; CLU_092220_1_0_1; -.
DR InParanoid; Q9SRS3; -.
DR OMA; SHAILFQ; -.
DR OrthoDB; 1546310at2759; -.
DR PhylomeDB; Q9SRS3; -.
DR PRO; PR:Q9SRS3; -.
DR Proteomes; UP000006548; Chromosome 3.
DR ExpressionAtlas; Q9SRS3; baseline and differential.
DR Genevisible; Q9SRS3; AT.
DR GO; GO:0009507; C:chloroplast; HDA:TAIR.
DR GO; GO:0009941; C:chloroplast envelope; HDA:TAIR.
DR GO; GO:0009535; C:chloroplast thylakoid membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0005829; C:cytosol; HDA:TAIR.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0042651; C:thylakoid membrane; IDA:TAIR.
DR GO; GO:0010020; P:chloroplast fission; IMP:TAIR.
DR GO; GO:0090143; P:nucleoid organization; IMP:TAIR.
DR InterPro; IPR003425; CCB3/YggT.
DR PANTHER; PTHR33219; PTHR33219; 1.
DR Pfam; PF02325; YGGT; 1.
PE 2: Evidence at transcript level;
KW Chloroplast; Membrane; Plastid; Reference proteome; Thylakoid;
KW Transit peptide; Transmembrane; Transmembrane helix.
FT TRANSIT 1..16
FT /note="Chloroplast"
FT /evidence="ECO:0000255"
FT CHAIN 17..232
FT /note="YlmG homolog protein 1-1, chloroplastic"
FT /evidence="ECO:0000255"
FT /id="PRO_0000433266"
FT TRANSMEM 147..167
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 201..221
FT /note="Helical"
FT /evidence="ECO:0000255"
FT CONFLICT 14..19
FT /note="YLPSSA -> FLLPPSSV (in Ref. 4; AAM66973)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 232 AA; 24922 MW; A146532E91034F0B CRC64;
MAAITALTLR SPVYLPSSAT SPRFHGFTNQ PPPARLFFPL NPFPSLSIQN PKSIRISASA
SPITTPILQT EKSTARSSTL TGSTRSLATL AALAIAVTRV LAQKLSLAIQ TSSPVIADGL
RFSLSTAGPV FFASLRDRPP GYLNTPLTVV AVGIKKWLDI YSGVLMVRVL LSWFPNIPWE
RQPLSAIRDL CDPYLNLFRN IIPPIFDTLD VSPLLAFAVL GTLGSIVHGS TG
