YMIA_ECOLI
ID YMIA_ECOLI Reviewed; 46 AA.
AC P0CB62;
DT 03-NOV-2009, integrated into UniProtKB/Swiss-Prot.
DT 08-MAY-2019, sequence version 3.
DT 03-AUG-2022, entry version 47.
DE RecName: Full=Protein YmiA;
GN Name=ymiA; OrderedLocusNames=b4522, JW1267.1;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
RN [3]
RP PROTEIN SEQUENCE OF 3-13.
RC STRAIN=K12 / BW25113;
RX PubMed=23908556; DOI=10.1074/mcp.m113.029165;
RA Krug K., Carpy A., Behrends G., Matic K., Soares N.C., Macek B.;
RT "Deep coverage of the Escherichia coli proteome enables the assessment of
RT false discovery rates in simple proteogenomic experiments.";
RL Mol. Cell. Proteomics 12:3420-3430(2013).
RN [4]
RP SUBCELLULAR LOCATION, AND INDUCTION.
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=19121005; DOI=10.1111/j.1365-2958.2008.06495.x;
RA Hemm M.R., Paul B.J., Schneider T.D., Storz G., Rudd K.E.;
RT "Small membrane proteins found by comparative genomics and ribosome binding
RT site models.";
RL Mol. Microbiol. 70:1487-1501(2008).
RN [5]
RP POSSIBLE FUNCTION, AND SEQUENCE REVISION TO N-TERMINUS.
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=30837344; DOI=10.1128/mbio.02819-18;
RA Weaver J., Mohammad F., Buskirk A.R., Storz G.;
RT "Identifying small proteins by ribosome profiling with stalled initiation
RT complexes.";
RL MBio 10:0-0(2019).
CC -!- SUBCELLULAR LOCATION: Cell inner membrane {ECO:0000305}; Single-pass
CC membrane protein {ECO:0000305}.
CC -!- INDUCTION: Constitutively expressed (at protein level).
CC {ECO:0000269|PubMed:19121005}.
CC -!- SEQUENCE CAUTION:
CC Sequence=ABD18655.2; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305|PubMed:30837344};
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DR EMBL; U00096; ABD18655.2; ALT_INIT; Genomic_DNA.
DR EMBL; AP009048; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR RefSeq; YP_588449.2; NC_000913.3.
DR AlphaFoldDB; P0CB62; -.
DR SMR; P0CB62; -.
DR IntAct; P0CB62; 3.
DR STRING; 511145.b4522; -.
DR PaxDb; P0CB62; -.
DR PRIDE; P0CB62; -.
DR EnsemblBacteria; ABD18655; ABD18655; b4522.
DR GeneID; 1450256; -.
DR KEGG; eco:b4522; -.
DR PATRIC; fig|511145.12.peg.1325; -.
DR eggNOG; ENOG5033ERG; Bacteria.
DR BioCyc; EcoCyc:MON0-2885; -.
DR PRO; PR:P0CB62; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
PE 1: Evidence at protein level;
KW Cell inner membrane; Cell membrane; Direct protein sequencing; Membrane;
KW Reference proteome; Transmembrane; Transmembrane helix.
FT CHAIN 1..46
FT /note="Protein YmiA"
FT /id="PRO_0000388331"
FT TRANSMEM 22..42
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 46 AA; 5337 MW; E5162DE9EB87885A CRC64;
MRLAMPSGNQ EPRRDPELKR KAWLAVFLGS ALFWVVVALL IWKVWG
