YODJ_BACSU
ID YODJ_BACSU Reviewed; 273 AA.
AC O34866; O30473; Q796B6;
DT 28-JUL-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JAN-1998, sequence version 1.
DT 03-AUG-2022, entry version 111.
DE RecName: Full=Putative carboxypeptidase YodJ;
DE EC=3.4.-.-;
DE Flags: Precursor;
GN Name=yodJ; Synonyms=yokZ; OrderedLocusNames=BSU19620;
OS Bacillus subtilis (strain 168).
OC Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX NCBI_TaxID=224308;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=168;
RX PubMed=9734814; DOI=10.1093/dnares/5.3.195;
RA Ghim S.-Y., Choi S.-K., Shin B.-S., Jeong Y.-M., Sorokin A., Ehrlich S.D.,
RA Park S.-H.;
RT "Sequence analysis of the Bacillus subtilis 168 chromosome region between
RT the sspC and odhA loci (184 degrees-180 degrees).";
RL DNA Res. 5:195-201(1998).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=168;
RX PubMed=9384377; DOI=10.1038/36786;
RA Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V.,
RA Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R.,
RA Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S.,
RA Bruschi C.V., Caldwell B., Capuano V., Carter N.M., Choi S.-K.,
RA Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F.,
RA Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D.,
RA Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M.,
RA Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P.,
RA Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K.,
RA Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S.,
RA Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y.,
RA Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G.,
RA Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M.,
RA Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y.,
RA Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
RA Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A.,
RA Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M.,
RA Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S.,
RA Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E.,
RA Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA Yoshikawa H., Danchin A.;
RT "The complete genome sequence of the Gram-positive bacterium Bacillus
RT subtilis.";
RL Nature 390:249-256(1997).
RN [3]
RP SUBCELLULAR LOCATION.
RC STRAIN=168;
RX PubMed=15187182; DOI=10.1128/mmbr.68.2.207-233.2004;
RA Tjalsma H., Antelmann H., Jongbloed J.D.H., Braun P.G., Darmon E.,
RA Dorenbos R., Dubois J.-Y.F., Westers H., Zanen G., Quax W.J., Kuipers O.P.,
RA Bron S., Hecker M., van Dijl J.M.;
RT "Proteomics of protein secretion by Bacillus subtilis: separating the
RT 'secrets' of the secretome.";
RL Microbiol. Mol. Biol. Rev. 68:207-233(2004).
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305|PubMed:15187182};
CC Lipid-anchor {ECO:0000305|PubMed:15187182}.
CC -!- SIMILARITY: Belongs to the peptidase M15B family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAB81165.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; AF015775; AAB72064.1; -; Genomic_DNA.
DR EMBL; AF006665; AAB81165.1; ALT_FRAME; Genomic_DNA.
DR EMBL; AL009126; CAB13853.1; -; Genomic_DNA.
DR PIR; F69903; F69903.
DR RefSeq; NP_389843.1; NC_000964.3.
DR RefSeq; WP_004399387.1; NZ_JNCM01000036.1.
DR PDB; 4OX3; X-ray; 2.00 A; A=61-273.
DR PDBsum; 4OX3; -.
DR AlphaFoldDB; O34866; -.
DR SMR; O34866; -.
DR STRING; 224308.BSU19620; -.
DR PaxDb; O34866; -.
DR PRIDE; O34866; -.
DR DNASU; 940023; -.
DR EnsemblBacteria; CAB13853; CAB13853; BSU_19620.
DR GeneID; 940023; -.
DR KEGG; bsu:BSU19620; -.
DR PATRIC; fig|224308.179.peg.2145; -.
DR eggNOG; COG1876; Bacteria.
DR InParanoid; O34866; -.
DR OMA; VQDNAYK; -.
DR PhylomeDB; O34866; -.
DR BioCyc; BSUB:BSU19620-MON; -.
DR Proteomes; UP000001570; Chromosome.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR GO; GO:0004180; F:carboxypeptidase activity; IEA:UniProtKB-KW.
DR GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW.
DR Gene3D; 3.30.1380.10; -; 1.
DR InterPro; IPR009045; Hedgehog_sig/DD-Pept_Zn-bd_sf.
DR InterPro; IPR003709; Pept_M15B.
DR Pfam; PF02557; VanY; 1.
DR SUPFAM; SSF55166; SSF55166; 1.
DR PROSITE; PS51257; PROKAR_LIPOPROTEIN; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Carboxypeptidase; Cell membrane; Hydrolase; Lipoprotein;
KW Membrane; Palmitate; Protease; Reference proteome; Signal.
FT SIGNAL 1..23
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00303"
FT CHAIN 24..273
FT /note="Putative carboxypeptidase YodJ"
FT /id="PRO_0000379984"
FT REGION 27..58
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 35..49
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT LIPID 24
FT /note="N-palmitoyl cysteine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00303"
FT LIPID 24
FT /note="S-diacylglycerol cysteine"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00303"
FT CONFLICT 93
FT /note="Q -> R (in Ref. 1; AAB81165)"
FT /evidence="ECO:0000305"
FT CONFLICT 126
FT /note="E -> D (in Ref. 1; AAB81165)"
FT /evidence="ECO:0000305"
FT HELIX 65..67
FT /evidence="ECO:0007829|PDB:4OX3"
FT STRAND 71..74
FT /evidence="ECO:0007829|PDB:4OX3"
FT STRAND 77..81
FT /evidence="ECO:0007829|PDB:4OX3"
FT STRAND 91..93
FT /evidence="ECO:0007829|PDB:4OX3"
FT STRAND 112..114
FT /evidence="ECO:0007829|PDB:4OX3"
FT HELIX 119..121
FT /evidence="ECO:0007829|PDB:4OX3"
FT HELIX 125..140
FT /evidence="ECO:0007829|PDB:4OX3"
FT STRAND 145..149
FT /evidence="ECO:0007829|PDB:4OX3"
FT HELIX 154..168
FT /evidence="ECO:0007829|PDB:4OX3"
FT HELIX 170..176
FT /evidence="ECO:0007829|PDB:4OX3"
FT HELIX 184..187
FT /evidence="ECO:0007829|PDB:4OX3"
FT STRAND 190..195
FT /evidence="ECO:0007829|PDB:4OX3"
FT HELIX 196..198
FT /evidence="ECO:0007829|PDB:4OX3"
FT HELIX 204..208
FT /evidence="ECO:0007829|PDB:4OX3"
FT HELIX 210..218
FT /evidence="ECO:0007829|PDB:4OX3"
FT HELIX 219..222
FT /evidence="ECO:0007829|PDB:4OX3"
FT STRAND 224..226
FT /evidence="ECO:0007829|PDB:4OX3"
FT HELIX 233..236
FT /evidence="ECO:0007829|PDB:4OX3"
FT STRAND 244..247
FT /evidence="ECO:0007829|PDB:4OX3"
FT HELIX 250..258
FT /evidence="ECO:0007829|PDB:4OX3"
FT HELIX 263..269
FT /evidence="ECO:0007829|PDB:4OX3"
SQ SEQUENCE 273 AA; 30854 MW; 1FC7D04E5D26953C CRC64;
MKKSGKWFSL AAALSVTAIV GAGCSMSNGD AQKDTKTTAE TKQTEQKTAD SKKSNTQNSE
FSLESQYFND IKKVDGLETI QNPENILALV NKQYALPGNY EPSDLVIPDV EFSFEEKIQK
RYIRKEAADA LKTMFDAAKK EGYELAAVSG YRSYDRQKVI FDNEVSLKGE RKAKEAVAYP
GESEHQTGLA MDISSRSNGF ELNEAFGSTA DGKWVQDNAY KYGFIIRYPK NKEDITKYEY
EPWHLRYVGK KAAKVIQDND LTLEEYFEKV KKI
