YPDC_ECOLI
ID YPDC_ECOLI Reviewed; 285 AA.
AC P77396;
DT 15-DEC-1998, integrated into UniProtKB/Swiss-Prot.
DT 01-FEB-1997, sequence version 1.
DT 03-AUG-2022, entry version 145.
DE RecName: Full=Uncharacterized HTH-type transcriptional regulator YpdC;
GN Name=ypdC; OrderedLocusNames=b2382, JW2379;
OS Escherichia coli (strain K12).
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=83333;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=9205837; DOI=10.1093/dnares/4.2.91;
RA Yamamoto Y., Aiba H., Baba T., Hayashi K., Inada T., Isono K., Itoh T.,
RA Kimura S., Kitagawa M., Makino K., Miki T., Mitsuhashi N., Mizobuchi K.,
RA Mori H., Nakade S., Nakamura Y., Nashimoto H., Oshima T., Oyama S.,
RA Saito N., Sampei G., Satoh Y., Sivasundaram S., Tagami H., Takahashi H.,
RA Takeda J., Takemoto K., Uehara K., Wada C., Yamagata S., Horiuchi T.;
RT "Construction of a contiguous 874-kb sequence of the Escherichia coli-K12
RT genome corresponding to 50.0-68.8 min on the linkage map and analysis of
RT its sequence features.";
RL DNA Res. 4:91-113(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / MG1655 / ATCC 47076;
RX PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA Shao Y.;
RT "The complete genome sequence of Escherichia coli K-12.";
RL Science 277:1453-1462(1997).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX PubMed=16738553; DOI=10.1038/msb4100049;
RA Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT and W3110.";
RL Mol. Syst. Biol. 2:E1-E5(2006).
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DR EMBL; U00096; AAC75441.1; -; Genomic_DNA.
DR EMBL; AP009048; BAA16252.1; -; Genomic_DNA.
DR PIR; C65012; C65012.
DR RefSeq; NP_416883.1; NC_000913.3.
DR RefSeq; WP_000646835.1; NZ_LN832404.1.
DR AlphaFoldDB; P77396; -.
DR SMR; P77396; -.
DR BioGRID; 4263009; 10.
DR BioGRID; 851197; 7.
DR IntAct; P77396; 8.
DR STRING; 511145.b2382; -.
DR PaxDb; P77396; -.
DR PRIDE; P77396; -.
DR DNASU; 946856; -.
DR EnsemblBacteria; AAC75441; AAC75441; b2382.
DR EnsemblBacteria; BAA16252; BAA16252; BAA16252.
DR GeneID; 946856; -.
DR KEGG; ecj:JW2379; -.
DR KEGG; eco:b2382; -.
DR PATRIC; fig|1411691.4.peg.4346; -.
DR EchoBASE; EB3902; -.
DR eggNOG; COG2207; Bacteria.
DR HOGENOM; CLU_000445_81_2_6; -.
DR InParanoid; P77396; -.
DR OMA; IPPNCWN; -.
DR PhylomeDB; P77396; -.
DR BioCyc; EcoCyc:G7245-MON; -.
DR PRO; PR:P77396; -.
DR Proteomes; UP000000318; Chromosome.
DR Proteomes; UP000000625; Chromosome.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR018060; HTH_AraC.
DR InterPro; IPR018062; HTH_AraC-typ_CS.
DR InterPro; IPR020449; Tscrpt_reg_HTH_AraC-type.
DR Pfam; PF12833; HTH_18; 1.
DR PRINTS; PR00032; HTHARAC.
DR SMART; SM00342; HTH_ARAC; 1.
DR SUPFAM; SSF46689; SSF46689; 2.
DR PROSITE; PS00041; HTH_ARAC_FAMILY_1; 1.
DR PROSITE; PS01124; HTH_ARAC_FAMILY_2; 1.
PE 4: Predicted;
KW DNA-binding; Reference proteome; Transcription; Transcription regulation.
FT CHAIN 1..285
FT /note="Uncharacterized HTH-type transcriptional regulator
FT YpdC"
FT /id="PRO_0000194617"
FT DOMAIN 184..282
FT /note="HTH araC/xylS-type"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00593"
FT DNA_BIND 201..222
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00593"
FT DNA_BIND 249..272
FT /note="H-T-H motif"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00593"
SQ SEQUENCE 285 AA; 32356 MW; 6F6A2DCA15BA8E4D CRC64;
MKAPGLPADQ QFFADLFSGL VLNPQLLGRV WFASQPASLP VGSLCIDFPR LDIVLRGEYG
NLLEAKQQRL VEGEMLFIPA RAANLPVNNK PVMLLSLVFA PTWLGLSFYD SRTTSLLHPA
RQIQLPSLQR GEGEAMLTAL THLSRSPLEQ NIIQPLVLSL LHLCRSVVNM PPGNSQPRGD
FLYHSICNWV QDNYAQPLTR ESVAQFFNIT PNHLSKLFAQ HGTMRFIEYV RWVRMAKARM
ILQKYHLSIH EVAQRCGFPD SDYFCRVFRR QFGLTPGEYS ARFQG
