ID   YPJD_ECOLI              Reviewed;         263 AA.
AC   P64432; P76599; Q2MAE9;
DT   11-OCT-2004, integrated into UniProtKB/Swiss-Prot.
DT   11-OCT-2004, sequence version 1.
DT   03-AUG-2022, entry version 101.
DE   RecName: Full=Inner membrane protein YpjD;
GN   Name=ypjD; OrderedLocusNames=b2611, JW2592;
OS   Escherichia coli (strain K12).
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Enterobacteriaceae; Escherichia.
OX   NCBI_TaxID=83333;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / MG1655 / ATCC 47076;
RX   PubMed=9278503; DOI=10.1126/science.277.5331.1453;
RA   Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V.,
RA   Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F.,
RA   Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B.,
RA   Shao Y.;
RT   "The complete genome sequence of Escherichia coli K-12.";
RL   Science 277:1453-1462(1997).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / W3110 / ATCC 27325 / DSM 5911;
RX   PubMed=16738553; DOI=10.1038/msb4100049;
RA   Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S.,
RA   Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.;
RT   "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655
RT   and W3110.";
RL   Mol. Syst. Biol. 2:E1-E5(2006).
RN   [3]
RP   TOPOLOGY [LARGE SCALE ANALYSIS].
RC   STRAIN=K12 / MG1655 / ATCC 47076;
RX   PubMed=15919996; DOI=10.1126/science.1109730;
RA   Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.;
RT   "Global topology analysis of the Escherichia coli inner membrane
RT   proteome.";
RL   Science 308:1321-1323(2005).
CC   -!- SUBCELLULAR LOCATION: Cell inner membrane; Multi-pass membrane protein.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BAE76757.1; Type=Erroneous initiation; Evidence={ECO:0000305};
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; U00096; AAC75660.2; -; Genomic_DNA.
DR   EMBL; AP009048; BAE76757.1; ALT_INIT; Genomic_DNA.
DR   PIR; F65039; F65039.
DR   RefSeq; NP_417102.4; NC_000913.3.
DR   RefSeq; WP_001338897.1; NZ_STEB01000040.1.
DR   AlphaFoldDB; P64432; -.
DR   SMR; P64432; -.
DR   BioGRID; 4260614; 16.
DR   STRING; 511145.b2611; -.
DR   TCDB; 9.B.14.3.6; the putative heme handling protein (hhp) family.
DR   jPOST; P64432; -.
DR   PaxDb; P64432; -.
DR   PRIDE; P64432; -.
DR   EnsemblBacteria; AAC75660; AAC75660; b2611.
DR   EnsemblBacteria; BAE76757; BAE76757; BAE76757.
DR   GeneID; 60903693; -.
DR   GeneID; 947098; -.
DR   KEGG; ecj:JW2592; -.
DR   KEGG; eco:b2611; -.
DR   PATRIC; fig|511145.12.peg.2709; -.
DR   EchoBASE; EB3978; -.
DR   eggNOG; COG4137; Bacteria.
DR   HOGENOM; CLU_049710_1_2_6; -.
DR   InParanoid; P64432; -.
DR   OMA; MPGEFIT; -.
DR   PhylomeDB; P64432; -.
DR   BioCyc; EcoCyc:G7355-MON; -.
DR   PRO; PR:P64432; -.
DR   Proteomes; UP000000318; Chromosome.
DR   Proteomes; UP000000625; Chromosome.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005886; C:plasma membrane; IDA:EcoCyc.
DR   GO; GO:0020037; F:heme binding; IEA:InterPro.
DR   GO; GO:0017004; P:cytochrome complex assembly; IEA:InterPro.
DR   InterPro; IPR002541; Cyt_c_assembly.
DR   Pfam; PF01578; Cytochrom_C_asm; 1.
PE   1: Evidence at protein level;
KW   Cell inner membrane; Cell membrane; Membrane; Reference proteome;
KW   Transmembrane; Transmembrane helix.
FT   CHAIN           1..263
FT                   /note="Inner membrane protein YpjD"
FT                   /id="PRO_0000201343"
FT   TOPO_DOM        1..3
FT                   /note="Periplasmic"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        4..23
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        24..34
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        35..54
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        55..63
FT                   /note="Periplasmic"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        64..83
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        84..89
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        90..109
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        110..123
FT                   /note="Periplasmic"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        124..146
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        147..181
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        182..201
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        202..210
FT                   /note="Periplasmic"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        211..228
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        229..236
FT                   /note="Cytoplasmic"
FT                   /evidence="ECO:0000255"
FT   TRANSMEM        237..259
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   TOPO_DOM        260..263
FT                   /note="Periplasmic"
FT                   /evidence="ECO:0000255"
SQ   SEQUENCE   263 AA;  29262 MW;  BC37422CB8479D0A CRC64;
     MPVFALLALV AYSVSLALIV PGLLQKNGGW RRMAIISAVI ALVCHAIALE ARILPDGDSG
     QNLSLLNVGS LVSLMICTVM TIVASRNRGW LLLPIVYAFA LINLALATFM PNEYITHLEA
     TPGMLVHIGL SLFSYATLII AALYALQLAW IDYQLKNKKL AFNQEMPPLM SIERKMFHIT
     QIGVVLLTLT LCTGLFYMHN LFSMENIDKA VLSIVAWFVY IVLLWGHYHE GWRGRRVVWF
     NVAGAVILTL AYFGSRIVQQ LIS