ID   YQGF_BRADU              Reviewed;         161 AA.
AC   Q89K24;
DT   16-JUN-2003, integrated into UniProtKB/Swiss-Prot.
DT   16-JUN-2003, sequence version 1.
DT   25-MAY-2022, entry version 95.
DE   RecName: Full=Putative pre-16S rRNA nuclease {ECO:0000255|HAMAP-Rule:MF_00651};
DE            EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00651};
GN   OrderedLocusNames=blr5094;
OS   Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 /
OS   NBRC 14792 / USDA 110).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
OC   Bradyrhizobiaceae; Bradyrhizobium.
OX   NCBI_TaxID=224911;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110;
RX   PubMed=12597275; DOI=10.1093/dnares/9.6.189;
RA   Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S.,
RA   Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M.,
RA   Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.;
RT   "Complete genomic sequence of nitrogen-fixing symbiotic bacterium
RT   Bradyrhizobium japonicum USDA110.";
RL   DNA Res. 9:189-197(2002).
CC   -!- FUNCTION: Could be a nuclease involved in processing of the 5'-end of
CC       pre-16S rRNA. {ECO:0000255|HAMAP-Rule:MF_00651}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00651}.
CC   -!- SIMILARITY: Belongs to the YqgF nuclease family. {ECO:0000255|HAMAP-
CC       Rule:MF_00651}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=BAC50359.1; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};
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DR   EMBL; BA000040; BAC50359.1; ALT_INIT; Genomic_DNA.
DR   RefSeq; NP_771734.1; NC_004463.1.
DR   RefSeq; WP_028171591.1; NZ_CP011360.1.
DR   AlphaFoldDB; Q89K24; -.
DR   SMR; Q89K24; -.
DR   STRING; 224911.27353359; -.
DR   EnsemblBacteria; BAC50359; BAC50359; BAC50359.
DR   GeneID; 64024857; -.
DR   KEGG; bja:blr5094; -.
DR   PATRIC; fig|224911.44.peg.4963; -.
DR   eggNOG; COG0816; Bacteria.
DR   HOGENOM; CLU_098240_1_1_5; -.
DR   InParanoid; Q89K24; -.
DR   OMA; PMGWTAQ; -.
DR   Proteomes; UP000002526; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.
DR   GO; GO:0000967; P:rRNA 5'-end processing; IBA:GO_Central.
DR   CDD; cd16964; YqgF; 1.
DR   Gene3D; 3.30.420.140; -; 1.
DR   HAMAP; MF_00651; Nuclease_YqgF; 1.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR005227; YqgF.
DR   InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR   InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR   PANTHER; PTHR33317; PTHR33317; 1.
DR   Pfam; PF03652; RuvX; 1.
DR   SMART; SM00732; YqgFc; 1.
DR   SUPFAM; SSF53098; SSF53098; 1.
DR   TIGRFAMs; TIGR00250; RNAse_H_YqgF; 1.
PE   3: Inferred from homology;
KW   Cytoplasm; Hydrolase; Nuclease; Reference proteome; Ribosome biogenesis.
FT   CHAIN           1..161
FT                   /note="Putative pre-16S rRNA nuclease"
FT                   /id="PRO_0000172031"
SQ   SEQUENCE   161 AA;  17241 MW;  A7829828D53F9A34 CRC64;
     MPALILPLVD AATHWPERGG LVGLDLGTKT IGVAVSNPDR RLATGVETIQ RKAFKQDAAR
     LLAIAAERKV VGFVLGLPIN MDGSEGPRAQ STRAFARNLA NLTTLPIGLW DERLSTAAVE
     RELIGMDVSR AKRAEVIDEH AAIFILQGAL DRLANLRTGN G