YQGF_RHIME
ID YQGF_RHIME Reviewed; 165 AA.
AC Q92QL0;
DT 16-JUN-2003, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 25-MAY-2022, entry version 97.
DE RecName: Full=Putative pre-16S rRNA nuclease {ECO:0000255|HAMAP-Rule:MF_00651};
DE EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00651};
GN OrderedLocusNames=R01309; ORFNames=SMc01355;
OS Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium
OS meliloti).
OC Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales;
OC Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.
OX NCBI_TaxID=266834;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=1021;
RX PubMed=11481430; DOI=10.1073/pnas.161294398;
RA Capela D., Barloy-Hubler F., Gouzy J., Bothe G., Ampe F., Batut J.,
RA Boistard P., Becker A., Boutry M., Cadieu E., Dreano S., Gloux S.,
RA Godrie T., Goffeau A., Kahn D., Kiss E., Lelaure V., Masuy D., Pohl T.,
RA Portetelle D., Puehler A., Purnelle B., Ramsperger U., Renard C.,
RA Thebault P., Vandenbol M., Weidner S., Galibert F.;
RT "Analysis of the chromosome sequence of the legume symbiont Sinorhizobium
RT meliloti strain 1021.";
RL Proc. Natl. Acad. Sci. U.S.A. 98:9877-9882(2001).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=1021;
RX PubMed=11474104; DOI=10.1126/science.1060966;
RA Galibert F., Finan T.M., Long S.R., Puehler A., Abola P., Ampe F.,
RA Barloy-Hubler F., Barnett M.J., Becker A., Boistard P., Bothe G.,
RA Boutry M., Bowser L., Buhrmester J., Cadieu E., Capela D., Chain P.,
RA Cowie A., Davis R.W., Dreano S., Federspiel N.A., Fisher R.F., Gloux S.,
RA Godrie T., Goffeau A., Golding B., Gouzy J., Gurjal M., Hernandez-Lucas I.,
RA Hong A., Huizar L., Hyman R.W., Jones T., Kahn D., Kahn M.L., Kalman S.,
RA Keating D.H., Kiss E., Komp C., Lelaure V., Masuy D., Palm C., Peck M.C.,
RA Pohl T.M., Portetelle D., Purnelle B., Ramsperger U., Surzycki R.,
RA Thebault P., Vandenbol M., Vorhoelter F.J., Weidner S., Wells D.H.,
RA Wong K., Yeh K.-C., Batut J.;
RT "The composite genome of the legume symbiont Sinorhizobium meliloti.";
RL Science 293:668-672(2001).
CC -!- FUNCTION: Could be a nuclease involved in processing of the 5'-end of
CC pre-16S rRNA. {ECO:0000255|HAMAP-Rule:MF_00651}.
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00651}.
CC -!- SIMILARITY: Belongs to the YqgF nuclease family. {ECO:0000255|HAMAP-
CC Rule:MF_00651}.
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DR EMBL; AL591688; CAC45888.1; -; Genomic_DNA.
DR RefSeq; NP_385415.1; NC_003047.1.
DR RefSeq; WP_010969171.1; NC_003047.1.
DR AlphaFoldDB; Q92QL0; -.
DR SMR; Q92QL0; -.
DR STRING; 266834.SMc01355; -.
DR EnsemblBacteria; CAC45888; CAC45888; SMc01355.
DR GeneID; 61602770; -.
DR KEGG; sme:SMc01355; -.
DR PATRIC; fig|266834.11.peg.2723; -.
DR eggNOG; COG0816; Bacteria.
DR HOGENOM; CLU_098240_1_1_5; -.
DR OMA; PMGWTAQ; -.
DR Proteomes; UP000001976; Chromosome.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR GO; GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.
DR GO; GO:0000967; P:rRNA 5'-end processing; IEA:UniProtKB-UniRule.
DR CDD; cd16964; YqgF; 1.
DR Gene3D; 3.30.420.140; -; 1.
DR HAMAP; MF_00651; Nuclease_YqgF; 1.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR005227; YqgF.
DR InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR PANTHER; PTHR33317; PTHR33317; 1.
DR Pfam; PF03652; RuvX; 1.
DR SMART; SM00732; YqgFc; 1.
DR SUPFAM; SSF53098; SSF53098; 1.
DR TIGRFAMs; TIGR00250; RNAse_H_YqgF; 1.
PE 3: Inferred from homology;
KW Cytoplasm; Hydrolase; Nuclease; Reference proteome; Ribosome biogenesis.
FT CHAIN 1..165
FT /note="Putative pre-16S rRNA nuclease"
FT /id="PRO_0000172124"
SQ SEQUENCE 165 AA; 17977 MW; 8CB383840619714E CRC64;
MAILTMEELA ERLPPYQSVA GLDLGTKTIG ISVSDLGRRF ATPREVIRRV KFGADAQALL
SFAEKEKIAA FIIGLPVNMD GSEGPRCQAT RAFVRNMGEK TDIPFVLWDE RLSTVAAERV
LIEMDVSRKK RAERIDSAAA SFILQGALDR LASLARGASG DRDAP