ID   YQGF_RHOCB              Reviewed;         159 AA.
AC   Q52673; D5ALI7;
DT   30-MAY-2000, integrated into UniProtKB/Swiss-Prot.
DT   28-JUN-2011, sequence version 2.
DT   25-MAY-2022, entry version 102.
DE   RecName: Full=Putative pre-16S rRNA nuclease {ECO:0000255|HAMAP-Rule:MF_00651};
DE            EC=3.1.-.- {ECO:0000255|HAMAP-Rule:MF_00651};
GN   Name=yqgF; OrderedLocusNames=RCAP_rcc02318;
OS   Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003).
OC   Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales;
OC   Rhodobacteraceae; Rhodobacter.
OX   NCBI_TaxID=272942;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC   STRAIN=MT1131;
RA   Lang S.E., Jenney F.E. Jr., Daldal F.;
RT   "Rhodobacter capsulatus cycH: a bipartite gene that affects differentially
RT   the biogenesis of various c-type cytochromes.";
RL   Submitted (JAN-1996) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ATCC BAA-309 / NBRC 16581 / SB1003;
RX   PubMed=20418398; DOI=10.1128/jb.00366-10;
RA   Strnad H., Lapidus A., Paces J., Ulbrich P., Vlcek C., Paces V.,
RA   Haselkorn R.;
RT   "Complete genome sequence of the photosynthetic purple nonsulfur bacterium
RT   Rhodobacter capsulatus SB 1003.";
RL   J. Bacteriol. 192:3545-3546(2010).
CC   -!- FUNCTION: Could be a nuclease involved in processing of the 5'-end of
CC       pre-16S rRNA. {ECO:0000255|HAMAP-Rule:MF_00651}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000255|HAMAP-Rule:MF_00651}.
CC   -!- SIMILARITY: Belongs to the YqgF nuclease family. {ECO:0000255|HAMAP-
CC       Rule:MF_00651}.
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DR   EMBL; U46071; AAB01816.1; -; Genomic_DNA.
DR   EMBL; CP001312; ADE86048.1; -; Genomic_DNA.
DR   RefSeq; WP_013068027.1; NC_014034.1.
DR   AlphaFoldDB; Q52673; -.
DR   SMR; Q52673; -.
DR   STRING; 272942.RCAP_rcc02318; -.
DR   EnsemblBacteria; ADE86048; ADE86048; RCAP_rcc02318.
DR   GeneID; 31491153; -.
DR   KEGG; rcp:RCAP_rcc02318; -.
DR   eggNOG; COG0816; Bacteria.
DR   HOGENOM; CLU_098240_1_1_5; -.
DR   OMA; PMGWTAQ; -.
DR   OrthoDB; 2075502at2; -.
DR   Proteomes; UP000002361; Chromosome.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0004518; F:nuclease activity; IEA:UniProtKB-KW.
DR   GO; GO:0000967; P:rRNA 5'-end processing; IEA:UniProtKB-UniRule.
DR   CDD; cd16964; YqgF; 1.
DR   Gene3D; 3.30.420.140; -; 1.
DR   HAMAP; MF_00651; Nuclease_YqgF; 1.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR005227; YqgF.
DR   InterPro; IPR006641; YqgF/RNaseH-like_dom.
DR   InterPro; IPR037027; YqgF/RNaseH-like_dom_sf.
DR   PANTHER; PTHR33317; PTHR33317; 1.
DR   Pfam; PF03652; RuvX; 1.
DR   SMART; SM00732; YqgFc; 1.
DR   SUPFAM; SSF53098; SSF53098; 1.
DR   TIGRFAMs; TIGR00250; RNAse_H_YqgF; 1.
PE   3: Inferred from homology;
KW   Cytoplasm; Hydrolase; Nuclease; Reference proteome; Ribosome biogenesis.
FT   CHAIN           1..159
FT                   /note="Putative pre-16S rRNA nuclease"
FT                   /id="PRO_0000172126"
FT   CONFLICT        53
FT                   /note="S -> T (in Ref. 1; AAB01816)"
FT                   /evidence="ECO:0000305"
FT   CONFLICT        56
FT                   /note="L -> V (in Ref. 1; AAB01816)"
FT                   /evidence="ECO:0000305"
SQ   SEQUENCE   159 AA;  17130 MW;  0DB8B176E73F9E20 CRC64;
     MICPGMDDFA AALPRVGALA GLDLGTKTIG VAVSDTLRGI ATPLRTIRRE KFSLDLADLM
     KTVAERQIAG FVLGLPVNMD GSEGPRAQST RAFARNLEKL TPLPITFWDE RLSTVAAERA
     MLEADLSRKR RAELVDHVAA GFILQGALDR LAHLGRAHG