ID   YQIR_BACSU              Reviewed;         692 AA.
AC   P54529;
DT   01-OCT-1996, integrated into UniProtKB/Swiss-Prot.
DT   01-OCT-1996, sequence version 1.
DT   03-AUG-2022, entry version 151.
DE   RecName: Full=Putative sigma L-dependent transcriptional regulator YqiR;
GN   Name=yqiR; OrderedLocusNames=BSU24100;
OS   Bacillus subtilis (strain 168).
OC   Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX   NCBI_TaxID=224308;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC   STRAIN=168 / JH642;
RX   PubMed=8969508; DOI=10.1099/13500872-142-11-3103;
RA   Mizuno M., Masuda S., Takemaru K., Hosono S., Sato T., Takeuchi M.,
RA   Kobayashi Y.;
RT   "Systematic sequencing of the 283 kb 210 degrees-232 degrees region of the
RT   Bacillus subtilis genome containing the skin element and many sporulation
RT   genes.";
RL   Microbiology 142:3103-3111(1996).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=168;
RX   PubMed=9384377; DOI=10.1038/36786;
RA   Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V.,
RA   Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R.,
RA   Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S.,
RA   Bruschi C.V., Caldwell B., Capuano V., Carter N.M., Choi S.-K.,
RA   Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F.,
RA   Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D.,
RA   Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M.,
RA   Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P.,
RA   Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K.,
RA   Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S.,
RA   Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y.,
RA   Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G.,
RA   Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA   Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA   Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA   Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA   Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA   Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M.,
RA   Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y.,
RA   Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
RA   Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A.,
RA   Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M.,
RA   Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S.,
RA   Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E.,
RA   Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA   Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA   Yoshikawa H., Danchin A.;
RT   "The complete genome sequence of the Gram-positive bacterium Bacillus
RT   subtilis.";
RL   Nature 390:249-256(1997).
CC   -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Single-pass membrane
CC       protein {ECO:0000305}.
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DR   EMBL; D84432; BAA12593.1; -; Genomic_DNA.
DR   EMBL; AL009126; CAB14341.1; -; Genomic_DNA.
DR   PIR; H69961; H69961.
DR   RefSeq; NP_390290.1; NC_000964.3.
DR   RefSeq; WP_004398669.1; NZ_JNCM01000036.1.
DR   AlphaFoldDB; P54529; -.
DR   SMR; P54529; -.
DR   STRING; 224308.BSU24100; -.
DR   PaxDb; P54529; -.
DR   PRIDE; P54529; -.
DR   EnsemblBacteria; CAB14341; CAB14341; BSU_24100.
DR   GeneID; 938666; -.
DR   KEGG; bsu:BSU24100; -.
DR   PATRIC; fig|224308.179.peg.2624; -.
DR   eggNOG; COG3290; Bacteria.
DR   eggNOG; COG3829; Bacteria.
DR   InParanoid; P54529; -.
DR   OMA; LEAKYTF; -.
DR   PhylomeDB; P54529; -.
DR   BioCyc; BSUB:BSU24100-MON; -.
DR   Proteomes; UP000001570; Chromosome.
DR   GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR   GO; GO:0000160; P:phosphorelay signal transduction system; IEA:UniProtKB-KW.
DR   GO; GO:0006355; P:regulation of transcription, DNA-templated; IEA:InterPro.
DR   CDD; cd00130; PAS; 2.
DR   Gene3D; 3.40.50.300; -; 1.
DR   InterPro; IPR003593; AAA+_ATPase.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR002197; HTH_Fis.
DR   InterPro; IPR036291; NAD(P)-bd_dom_sf.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR000014; PAS.
DR   InterPro; IPR035965; PAS-like_dom_sf.
DR   InterPro; IPR013767; PAS_fold.
DR   InterPro; IPR002078; Sigma_54_int.
DR   InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR   InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR   InterPro; IPR025944; Sigma_54_int_dom_CS.
DR   Pfam; PF02954; HTH_8; 1.
DR   Pfam; PF00989; PAS; 2.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   PRINTS; PR01590; HTHFIS.
DR   SMART; SM00382; AAA; 1.
DR   SMART; SM00091; PAS; 2.
DR   SUPFAM; SSF46689; SSF46689; 1.
DR   SUPFAM; SSF51735; SSF51735; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   SUPFAM; SSF55785; SSF55785; 2.
DR   TIGRFAMs; TIGR00229; sensory_box; 2.
DR   PROSITE; PS50112; PAS; 2.
DR   PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR   PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR   PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
KW   ATP-binding; Cell membrane; DNA-binding; Membrane; Nucleotide-binding;
KW   Reference proteome; Repeat; Transcription; Transcription regulation;
KW   Transmembrane; Transmembrane helix; Two-component regulatory system.
FT   CHAIN           1..692
FT                   /note="Putative sigma L-dependent transcriptional regulator
FT                   YqiR"
FT                   /id="PRO_0000081386"
FT   TRANSMEM        13..33
FT                   /note="Helical"
FT                   /evidence="ECO:0000255"
FT   DOMAIN          115..185
FT                   /note="PAS 1"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00140"
FT   DOMAIN          234..305
FT                   /note="PAS 2"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00140"
FT   DOMAIN          368..598
FT                   /note="Sigma-54 factor interaction"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00193"
FT   DNA_BIND        663..682
FT                   /note="H-T-H motif"
FT                   /evidence="ECO:0000250"
FT   BINDING         396..403
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00193"
FT   BINDING         460..469
FT                   /ligand="ATP"
FT                   /ligand_id="ChEBI:CHEBI:30616"
FT                   /evidence="ECO:0000255|PROSITE-ProRule:PRU00193"
SQ   SEQUENCE   692 AA;  77930 MW;  A744812421421158 CRC64;
     MQKVLIVGAG KRGTALLHIL IKTAIIDIIA VVDKDPEAPG LKEAEQYGIA VSSDWKPYIQ
     QKPDIVIHTT GDQAVFDELL QRKHEDTIVM PGKMAYIVFQ LMEEKQHLIQ MLKEQTYKYD
     RIFNSTHDGM IFIDINEEII LFNHMAEKMV GKKREEVIGR PIKEVIPSTK MPRILKTRVP
     EYNQKQLLGD HLQIVTTRLP IIDEGGRLLG ALCVFKDITD AVELAEEVTN LKQVRTMLEA
     IIQSSDEAIS VVDENGIGLL INKAYTKMTG LSEKEVIGKP ANTDISEGES MHLKVLETRR
     PVRGVRMKVG PNEKEVIVNV APVIVDGILK GSVGVIHDVS EIKMLTAELN RARQIIRTLE
     AKYTFDDIIG KSEQMLVALE QAKLGAKTPA TILLRGESGT GKELFAHAIH NESDRKYNKF
     IRVNCAALSE NLLESELFGY EDGAFSGAKR GGKKGLFEEA NNGSIFLDEI GELTQNMQAK
     LLRVLQEKEI VRVGGTKAIP VNVRVIAATN VNIEKAMADG TFREDLYYRI NRYPISIPPL
     RQRLEDIEAL SVRLIQKINR DYGRNVKGLS QQALRALSAY HWPGNVRELE NVLGRAMIFL
     NPHMEWIEKD HLPVFELEQK ENDTDQGTGF DFPDIEGEKL SVAVEKFEAH LIQQTLEKHH
     FNRTKTAKAL GVSIRNLYYK MDKYGLANEG MQ