CBP_ORYSJ
ID CBP_ORYSJ Reviewed; 292 AA.
AC Q2QY10; B9GBT1;
DT 05-JUN-2019, integrated into UniProtKB/Swiss-Prot.
DT 24-JAN-2006, sequence version 1.
DT 03-AUG-2022, entry version 123.
DE RecName: Full=Calcium-binding protein CBP {ECO:0000303|PubMed:22212404};
DE Short=OsCBP {ECO:0000303|PubMed:22212404};
GN Name=CBP {ECO:0000303|PubMed:22212404};
GN OrderedLocusNames=LOC_Os12g04240 {ECO:0000312|EMBL:ABA95760.1},
GN Os12g0137100 {ECO:0000312|EMBL:BAF29125.1};
GN ORFNames=OsJ_35159 {ECO:0000312|EMBL:EEE52738.1},
GN OSNPB_120137100 {ECO:0000312|EMBL:BAT15805.1};
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16188032; DOI=10.1186/1741-7007-3-20;
RG The rice chromosomes 11 and 12 sequencing consortia;
RT "The sequence of rice chromosomes 11 and 12, rich in disease resistance
RT genes and recent gene duplications.";
RL BMC Biol. 3:20-20(2005).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F.,
RA Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q.,
RA Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J.,
RA Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M.,
RA McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [7]
RP FUNCTION, AND INDUCTION BY GLOMUS INTRARADICES.
RX PubMed=22212404; DOI=10.1111/j.1364-3703.2011.00773.x;
RA Campos-Soriano L., Garcia-Martinez J., San Segundo B.;
RT "The arbuscular mycorrhizal symbiosis promotes the systemic induction of
RT regulatory defence-related genes in rice leaves and confers resistance to
RT pathogen infection.";
RL Mol. Plant Pathol. 13:579-592(2012).
CC -!- FUNCTION: Potential calcium sensor. {ECO:0000305|PubMed:22212404}.
CC -!- INDUCTION: Up-regulated in leaves of mycorrhizal plants upon arbuscular
CC mycorrhizal (AM) symbioses with G.intraradices.
CC {ECO:0000269|PubMed:22212404}.
CC -!- SEQUENCE CAUTION:
CC Sequence=EEE52738.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=EEE52738.1; Type=Frameshift; Evidence={ECO:0000305};
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DR EMBL; DP000011; ABA95760.1; -; Genomic_DNA.
DR EMBL; AP008218; BAF29125.1; -; Genomic_DNA.
DR EMBL; AP014968; BAT15805.1; -; Genomic_DNA.
DR EMBL; CM000149; EEE52738.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AK059278; BAG86940.1; -; mRNA.
DR AlphaFoldDB; Q2QY10; -.
DR SMR; Q2QY10; -.
DR STRING; 4530.OS12T0137100-01; -.
DR PaxDb; Q2QY10; -.
DR PRIDE; Q2QY10; -.
DR EnsemblPlants; Os12t0137100-01; Os12t0137100-01; Os12g0137100.
DR Gramene; Os12t0137100-01; Os12t0137100-01; Os12g0137100.
DR eggNOG; KOG0037; Eukaryota.
DR HOGENOM; CLU_051357_3_0_1; -.
DR InParanoid; Q2QY10; -.
DR OMA; RREQYLW; -.
DR Proteomes; UP000000763; Chromosome 12.
DR Proteomes; UP000007752; Chromosome 12.
DR Proteomes; UP000059680; Chromosome 12.
DR GO; GO:0005509; F:calcium ion binding; IEA:InterPro.
DR GO; GO:0009610; P:response to symbiotic fungus; IEP:UniProtKB.
DR InterPro; IPR044590; CML48/49/50.
DR InterPro; IPR011992; EF-hand-dom_pair.
DR InterPro; IPR018247; EF_Hand_1_Ca_BS.
DR InterPro; IPR002048; EF_hand_dom.
DR PANTHER; PTHR46824; PTHR46824; 1.
DR Pfam; PF13202; EF-hand_5; 1.
DR Pfam; PF13405; EF-hand_6; 1.
DR SMART; SM00054; EFh; 2.
DR SUPFAM; SSF47473; SSF47473; 1.
DR PROSITE; PS00018; EF_HAND_1; 2.
DR PROSITE; PS50222; EF_HAND_2; 2.
PE 2: Evidence at transcript level;
KW Calcium; Metal-binding; Reference proteome; Repeat.
FT CHAIN 1..292
FT /note="Calcium-binding protein CBP"
FT /id="PRO_0000447279"
FT DOMAIN 121..156
FT /note="EF-hand 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448"
FT DOMAIN 187..222
FT /note="EF-hand 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448"
FT REGION 1..80
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 24..40
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 134
FT /ligand="Ca(2+)"
FT /ligand_id="ChEBI:CHEBI:29108"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448"
FT BINDING 136
FT /ligand="Ca(2+)"
FT /ligand_id="ChEBI:CHEBI:29108"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448"
FT BINDING 138
FT /ligand="Ca(2+)"
FT /ligand_id="ChEBI:CHEBI:29108"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448"
FT BINDING 140
FT /ligand="Ca(2+)"
FT /ligand_id="ChEBI:CHEBI:29108"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448"
FT BINDING 145
FT /ligand="Ca(2+)"
FT /ligand_id="ChEBI:CHEBI:29108"
FT /ligand_label="1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448"
FT BINDING 200
FT /ligand="Ca(2+)"
FT /ligand_id="ChEBI:CHEBI:29108"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448"
FT BINDING 202
FT /ligand="Ca(2+)"
FT /ligand_id="ChEBI:CHEBI:29108"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448"
FT BINDING 204
FT /ligand="Ca(2+)"
FT /ligand_id="ChEBI:CHEBI:29108"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448"
FT BINDING 206
FT /ligand="Ca(2+)"
FT /ligand_id="ChEBI:CHEBI:29108"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448"
FT BINDING 211
FT /ligand="Ca(2+)"
FT /ligand_id="ChEBI:CHEBI:29108"
FT /ligand_label="2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00448"
SQ SEQUENCE 292 AA; 30593 MW; 29F3ED518542924D CRC64;
MAGYPPNPGS GYPYGGAGGY GAPPPPYGSS PAPSAPPYGA KPPKEGKTSS SSAPYYGGGG
GYGAPPSTQP YGSGGGYGAP PSSQPYGAPY GAPPPSSAPY GAPGGYGSPF ASLVPSAFPP
GTDPNVVACF QAADRDGSGM IDDKELQSAL SGYSQSFSLR TVHLLMYLFT NTNVRKIGPK
EFTSVFYSLQ NWRSIFERFD RDRSGKIDAT ELRDALLSLG YSVSPTVLDL LVSKFDKTGG
KNKAIEYDNF IECCLTVKGL TEKFKEKDTA FSGSATFTYE AFMLTVLPFL IA
