YSL16_ORYSJ
ID YSL16_ORYSJ Reviewed; 675 AA.
AC Q7XN54; Q0JBC3; Q6R5L8;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2004, sequence version 2.
DT 03-AUG-2022, entry version 88.
DE RecName: Full=Probable metal-nicotianamine transporter YSL16;
DE AltName: Full=Protein YELLOW STRIPE LIKE 16;
DE Short=OsYSL16;
GN Name=YSL16; OrderedLocusNames=Os04g0542800, LOC_Os04g45900;
GN ORFNames=OSJNBb0103I08.15;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Nipponbare;
RX PubMed=15255870; DOI=10.1111/j.1365-313x.2004.02146.x;
RA Koike S., Inoue H., Mizuno D., Takahashi M., Nakanishi H., Mori S.,
RA Nishizawa N.K.;
RT "OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron
RT and expressed in the phloem.";
RL Plant J. 39:415-424(2004).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Zhu Z.;
RT "Sequence of rice iron transport protein 2 gene.";
RL Submitted (DEC-2003) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447439; DOI=10.1038/nature01183;
RA Feng Q., Zhang Y., Hao P., Wang S., Fu G., Huang Y., Li Y., Zhu J., Liu Y.,
RA Hu X., Jia P., Zhang Y., Zhao Q., Ying K., Yu S., Tang Y., Weng Q.,
RA Zhang L., Lu Y., Mu J., Lu Y., Zhang L.S., Yu Z., Fan D., Liu X., Lu T.,
RA Li C., Wu Y., Sun T., Lei H., Li T., Hu H., Guan J., Wu M., Zhang R.,
RA Zhou B., Chen Z., Chen L., Jin Z., Wang R., Yin H., Cai Z., Ren S., Lv G.,
RA Gu W., Zhu G., Tu Y., Jia J., Zhang Y., Chen J., Kang H., Chen X., Shao C.,
RA Sun Y., Hu Q., Zhang X., Zhang W., Wang L., Ding C., Sheng H., Gu J.,
RA Chen S., Ni L., Zhu F., Chen W., Lan L., Lai Y., Cheng Z., Gu M., Jiang J.,
RA Li J., Hong G., Xue Y., Han B.;
RT "Sequence and analysis of rice chromosome 4.";
RL Nature 420:316-320(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP TISSUE SPECIFICITY, AND INDUCTION.
RX PubMed=19049971; DOI=10.1074/jbc.m806042200;
RA Inoue H., Kobayashi T., Nozoye T., Takahashi M., Kakei Y., Suzuki K.,
RA Nakazono M., Nakanishi H., Mori S., Nishizawa N.K.;
RT "Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid Transporter
RT expressed in the roots and is essential for iron uptake in early growth of
RT the seedlings.";
RL J. Biol. Chem. 284:3470-3479(2009).
CC -!- FUNCTION: May be involved in the transport of nicotianamine-chelated
CC metals. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:19049971}.
CC -!- INDUCTION: In root stele by iron deficiency.
CC {ECO:0000269|PubMed:19049971}.
CC -!- SIMILARITY: Belongs to the YSL (TC 2.A.67.2) family. {ECO:0000305}.
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DR EMBL; AB190924; BAE91894.1; -; mRNA.
DR EMBL; AY512582; AAS49494.1; -; mRNA.
DR EMBL; AL606695; CAE04269.2; -; Genomic_DNA.
DR EMBL; AP008210; BAF15364.2; -; Genomic_DNA.
DR EMBL; AP014960; BAS90306.1; -; Genomic_DNA.
DR RefSeq; XP_015637058.1; XM_015781572.1.
DR AlphaFoldDB; Q7XN54; -.
DR STRING; 4530.OS04T0542800-01; -.
DR PaxDb; Q7XN54; -.
DR PRIDE; Q7XN54; -.
DR EnsemblPlants; Os04t0542800-01; Os04t0542800-01; Os04g0542800.
DR GeneID; 4336546; -.
DR Gramene; Os04t0542800-01; Os04t0542800-01; Os04g0542800.
DR KEGG; osa:4336546; -.
DR eggNOG; ENOG502QQ2H; Eukaryota.
DR HOGENOM; CLU_015477_2_0_1; -.
DR InParanoid; Q7XN54; -.
DR OMA; MNFTAAH; -.
DR OrthoDB; 525938at2759; -.
DR PlantReactome; R-OSA-9025727; Iron uptake and transport in root vascular system.
DR Proteomes; UP000000763; Chromosome 4.
DR Proteomes; UP000059680; Chromosome 4.
DR ExpressionAtlas; Q7XN54; baseline and differential.
DR Genevisible; Q7XN54; OS.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IBA:GO_Central.
DR GO; GO:0005886; C:plasma membrane; IBA:GO_Central.
DR GO; GO:0051980; F:iron-nicotianamine transmembrane transporter activity; IBA:GO_Central.
DR GO; GO:0035673; F:oligopeptide transmembrane transporter activity; IEA:InterPro.
DR GO; GO:0010039; P:response to iron ion; IBA:GO_Central.
DR GO; GO:0048316; P:seed development; IBA:GO_Central.
DR InterPro; IPR004813; OPT.
DR InterPro; IPR045035; YSL-like.
DR PANTHER; PTHR31645; PTHR31645; 1.
DR Pfam; PF03169; OPT; 1.
DR TIGRFAMs; TIGR00728; OPT_sfam; 1.
PE 2: Evidence at transcript level;
KW Membrane; Reference proteome; Transmembrane; Transmembrane helix;
KW Transport.
FT CHAIN 1..675
FT /note="Probable metal-nicotianamine transporter YSL16"
FT /id="PRO_0000363879"
FT TRANSMEM 50..70
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 73..93
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 118..138
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 162..182
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 231..251
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 283..303
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 329..349
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 393..413
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 421..441
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 453..473
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 507..527
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 567..587
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 605..625
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 633..653
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 675 AA; 73808 MW; E1E08BE3DF297DD4 CRC64;
MDRHALGGGG ALEIEKTPEA AEDMESEPAL AAAREAERVP PWREQVTARG MVAALLIGVV
YTVIVMKLSL TTGLIPTLNV SAALLAFLAL RGWTHALDRL GIASRPFTRQ ENTVIQTCAV
ACYTIGYGGG FGSFLLGLNK KTYELSGAST PGNVPGSYKE PGIGWMTGFL LSTSFVGLLT
LLPLRKVLVI DYKLTYPSGT ATAVLINGFH TPQGDKNAKK QVRGFLRYFG ISFLWSFFQW
FYTGGDVCGF LQFPTFGLKA WKHTFFFDFS LTYVGAGMIC SHLVNLSLLF GAILSWGIMW
PLIGKQKGNW YSAKASESSM SGLFGYKSFI CIALLVGDGF YNFVKVIVVT LKSVRERSRR
RGLNNRVADA DTMAIDDMQR NEVFNRDNIP TWMAYTGYTL LSVIAVVLIP VMFRQVKWYY
VIIAYLLAPA LGFCNAYGTG LTDMNMGYNY GKIALFIFAA WAGKDDGVVA GLVGCGLVKQ
LVLISADLMH DFKTGHLTLT SPRSMLVGQV VGTLMGCVVA PLTFFLFYKA FDVGDPNGYW
KAPYALIYRN MAIIGVEGFS ALPRHCLQLC AGFFAFAVLA NLARDFLPRR YGRYMPLPMA
MAVPFLVGAS FAIDMCAGSL VVFLWHRFDG KRAALLVPAV ASGLICGDGI WTFPSSLLAL
AKVKPPICMK FIPGN
