YSL17_ORYSJ
ID YSL17_ORYSJ Reviewed; 698 AA.
AC Q6ZCX1; Q25CH1;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 05-JUL-2004, sequence version 1.
DT 03-AUG-2022, entry version 87.
DE RecName: Full=Probable metal-nicotianamine transporter YSL17;
DE AltName: Full=Protein YELLOW STRIPE LIKE 17;
DE Short=OsYSL17;
GN Name=YSL17; OrderedLocusNames=Os08g0280300, LOC_Os08g17830;
GN ORFNames=OJ1003_E05.7, P0026A08.33;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [2]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [4]
RP NUCLEOTIDE SEQUENCE [MRNA] OF 63-698, GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Nipponbare;
RX PubMed=15255870; DOI=10.1111/j.1365-313x.2004.02146.x;
RA Koike S., Inoue H., Mizuno D., Takahashi M., Nakanishi H., Mori S.,
RA Nishizawa N.K.;
RT "OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron
RT and expressed in the phloem.";
RL Plant J. 39:415-424(2004).
RN [5]
RP TISSUE SPECIFICITY.
RX PubMed=19049971; DOI=10.1074/jbc.m806042200;
RA Inoue H., Kobayashi T., Nozoye T., Takahashi M., Kakei Y., Suzuki K.,
RA Nakazono M., Nakanishi H., Mori S., Nishizawa N.K.;
RT "Rice OsYSL15 is an iron-regulated iron(III)-deoxymugineic acid Transporter
RT expressed in the roots and is essential for iron uptake in early growth of
RT the seedlings.";
RL J. Biol. Chem. 284:3470-3479(2009).
CC -!- FUNCTION: May be involved in the transport of nicotianamine-chelated
CC metals. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- TISSUE SPECIFICITY: Expressed at low levels in roots.
CC {ECO:0000269|PubMed:19049971}.
CC -!- SIMILARITY: Belongs to the YSL (TC 2.A.67.2) family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=BAF23356.2; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AP003936; BAC99405.1; -; Genomic_DNA.
DR EMBL; AP004556; BAC99534.1; -; Genomic_DNA.
DR EMBL; AP008214; BAF23356.2; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014964; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR EMBL; AB190925; BAE91895.1; -; mRNA.
DR RefSeq; XP_015649646.1; XM_015794160.1.
DR AlphaFoldDB; Q6ZCX1; -.
DR STRING; 4530.OS08T0280300-00; -.
DR PaxDb; Q6ZCX1; -.
DR PRIDE; Q6ZCX1; -.
DR GeneID; 4345163; -.
DR KEGG; osa:4345163; -.
DR eggNOG; ENOG502QQ2H; Eukaryota.
DR HOGENOM; CLU_015477_2_0_1; -.
DR InParanoid; Q6ZCX1; -.
DR OrthoDB; 525938at2759; -.
DR Proteomes; UP000000763; Chromosome 8.
DR Proteomes; UP000059680; Chromosome 8.
DR Genevisible; Q6ZCX1; OS.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IBA:GO_Central.
DR GO; GO:0035673; F:oligopeptide transmembrane transporter activity; IEA:InterPro.
DR InterPro; IPR004813; OPT.
DR InterPro; IPR045035; YSL-like.
DR PANTHER; PTHR31645; PTHR31645; 1.
DR Pfam; PF03169; OPT; 1.
DR TIGRFAMs; TIGR00728; OPT_sfam; 1.
PE 2: Evidence at transcript level;
KW Membrane; Reference proteome; Transmembrane; Transmembrane helix;
KW Transport.
FT CHAIN 1..698
FT /note="Probable metal-nicotianamine transporter YSL17"
FT /id="PRO_0000363880"
FT TRANSMEM 43..63
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 67..87
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 114..134
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 157..177
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 216..236
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 277..297
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 322..342
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 395..415
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 424..444
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 463..483
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 511..531
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 567..587
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 607..627
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 644..664
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 1..36
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..23
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 698 AA; 74521 MW; 04E1910C4E49F1FE CRC64;
MAEEARGGQR VVVDDDREDA SSVASSTERA FEGEPLPSLG ETVTARSAAV SGVLGAVVSV
VAMRLNLTSG LLPSLGVPAG LLGFFLARVW IRALDVVGVS HLPFTRQENT LIQIAVVSCS
TIAFSGGFGT YILGMSGKSA NEGHIGSHGR NVEEPNIGRV IAFLFLVNFS GLFIIVPLRK
MMIIRHRLTF PSGTATAHLI NSFHTPHGAK QARLQVVTLF KSLGATVLWP IFQWFFAGGK
NCGFQIFPTF GMAAYRRGFY FDFSTTNVGI GMICPPMITA SMLAGSIVSW GILWPYIETK
AGRWFPENLD ANDLGGIMGY RVFVGVSMIL ADGLFTILSA LVRTACAMRK RRRGASTVTA
AVPPFQCLSA TERTMQSFDD RRRAQVFLRD SFPTWVAVAS YAALAALSVV AVPLLYPQLG
HRHVAAAYVA APVFAFCNAY GVGVTDMNLS ATYGKIAMMV FSSWVGMDGG GVVAGLAACG
IIVSAVSGSS DFMQDFKTGY LTLTSPRAML VGQVAGTALG CVVNPAIFWV FYKVYNMGGG
GGDGADVAPY ARAYRGIAVL SVGRHGLPDH SVLLCKLFFA MALALSAARE VAERRRWRAL
RYIPSTIGVA VAFFVPPRIP VGMAVGCLAL HVWRRHVDAG GARLLLPAVA SGLICGDGLG
SLASSMLTLL RARPPICIKF VSRFENQKLD AFLATRHA
