YSL18_ORYSJ
ID YSL18_ORYSJ Reviewed; 679 AA.
AC Q941V3; A0A0P0VA10; Q6R5L7;
DT 03-MAR-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-DEC-2001, sequence version 1.
DT 03-AUG-2022, entry version 101.
DE RecName: Full=Probable metal-nicotianamine transporter YSL18;
DE AltName: Full=Protein YELLOW STRIPE LIKE 18;
DE Short=OsYSL18;
GN Name=YSL18; OrderedLocusNames=Os01g0829900, LOC_Os01g61390;
GN ORFNames=B1088C09.39, P0446G04.12;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA], GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Nipponbare;
RX PubMed=15255870; DOI=10.1111/j.1365-313x.2004.02146.x;
RA Koike S., Inoue H., Mizuno D., Takahashi M., Nakanishi H., Mori S.,
RA Nishizawa N.K.;
RT "OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron
RT and expressed in the phloem.";
RL Plant J. 39:415-424(2004).
RN [2]
RP NUCLEOTIDE SEQUENCE [MRNA].
RA Zhu Z.;
RT "Sequence of iron-phytosiderophore transporter protein yellow stripe 1
RT protein gene.";
RL Submitted (DEC-2003) to the EMBL/GenBank/DDBJ databases.
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [4]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [6]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [7]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: May be involved in the transport of nicotianamine-chelated
CC metals. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the YSL (TC 2.A.67.2) family. {ECO:0000305}.
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DR EMBL; AB190926; BAE91896.1; -; mRNA.
DR EMBL; AY512583; AAS49495.1; -; mRNA.
DR EMBL; AP003252; BAB89585.1; -; Genomic_DNA.
DR EMBL; AP003734; BAB68117.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF06606.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS75046.1; -; Genomic_DNA.
DR EMBL; AK070618; BAG92058.1; -; mRNA.
DR RefSeq; XP_015621577.1; XM_015766091.1.
DR AlphaFoldDB; Q941V3; -.
DR STRING; 4530.OS01T0829900-01; -.
DR TCDB; 2.A.67.2.5; the oligopeptide transporter (opt) family.
DR PaxDb; Q941V3; -.
DR PRIDE; Q941V3; -.
DR EnsemblPlants; Os01t0829900-01; Os01t0829900-01; Os01g0829900.
DR GeneID; 4327424; -.
DR Gramene; Os01t0829900-01; Os01t0829900-01; Os01g0829900.
DR KEGG; osa:4327424; -.
DR eggNOG; ENOG502QQ2H; Eukaryota.
DR HOGENOM; CLU_015477_2_0_1; -.
DR InParanoid; Q941V3; -.
DR OMA; GRMMAFF; -.
DR OrthoDB; 525938at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q941V3; OS.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IBA:GO_Central.
DR GO; GO:0035673; F:oligopeptide transmembrane transporter activity; IEA:InterPro.
DR InterPro; IPR004813; OPT.
DR InterPro; IPR045035; YSL-like.
DR PANTHER; PTHR31645; PTHR31645; 1.
DR Pfam; PF03169; OPT; 1.
DR TIGRFAMs; TIGR00728; OPT_sfam; 1.
PE 2: Evidence at transcript level;
KW Membrane; Reference proteome; Transmembrane; Transmembrane helix;
KW Transport.
FT CHAIN 1..679
FT /note="Probable metal-nicotianamine transporter YSL18"
FT /id="PRO_0000363881"
FT TRANSMEM 29..49
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 51..71
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 101..121
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 144..164
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 211..231
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 255..275
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 309..329
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 379..399
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 407..427
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 441..461
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 497..517
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 547..567
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 593..613
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 627..647
FT /note="Helical"
FT /evidence="ECO:0000255"
FT REGION 1..21
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 679 AA; 73819 MW; E13E49563AF3A091 CRC64;
MESVGDPRDG PSTERAFEGQ PVPPWTEQVT LRAVVASVAL GVALSSVMMN LVFTSGIIPS
LNISAGLLGF FLLKAWTRLL DQLGSPGRPF TRQENAVVQT CVVACASMTY SGGFGSYLLA
MDRKTAEKTS TGDDSSASVS EPEFGRMMAF FFLVSFVGLL AIVPMRKTMI IRHRLTFPSG
SATAHLINSF HTPHGARQAK RQVSLVLRSS LASLFWSIFQ WFYTGGPNCG FTSFPTFGLS
AFNRGFYISL NGTYVGIGMI SPHLINVSML FGSIISWGIM RPYIRSKRGI WYDADLQETN
LKSFSGYKVF CAIAMILGDG IFQLVAISLR TIHTVRHHQV AAETLRSFSD VDAMPRPVMS
FDDRRRTQVF LREHIPSTFA ISGYVVLATV STVVIPLMYG QVRYYHVAAA YAFAPVLAFC
NAYGTGVAET NFSAQYNKLV ILMFASWIGI KNGGIVGSLV ICGIVSSIVS TASDFMSDFK
TSYLTLTSPR ATLVSQVIGT AMGCVVNPAV FTVFHHFYEM NPNKTYQAPL AKIYRGIAVL
GAGGLELPKY CLAISATFFV LALAVCAMRE VAAHGKWRAE PYIPSVTGMA VSFLLVPAVS
IDMCIGSLIV FLWNRNDKLG SQVFGPVLAS GLICGDGLFS IPYALLARYD VTPPICIRFL
GRVQNDKLDA FLASKAKAG
