YSL1_ORYSJ
ID YSL1_ORYSJ Reviewed; 708 AA.
AC Q9FTU1; A0A0P0V0L8;
DT 03-MAR-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-MAR-2001, sequence version 1.
DT 03-AUG-2022, entry version 97.
DE RecName: Full=Probable metal-nicotianamine transporter YSL1;
DE AltName: Full=Protein YELLOW STRIPE LIKE 1;
DE Short=OsYSL1;
GN Name=YSL1; OrderedLocusNames=Os01g0238700, LOC_Os01g13710;
GN ORFNames=OSJNBa0086P08.25;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=15255870; DOI=10.1111/j.1365-313x.2004.02146.x;
RA Koike S., Inoue H., Mizuno D., Takahashi M., Nakanishi H., Mori S.,
RA Nishizawa N.K.;
RT "OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron
RT and expressed in the phloem.";
RL Plant J. 39:415-424(2004).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [6]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
CC -!- FUNCTION: May be involved in the transport of nicotianamine-chelated
CC metals. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the YSL (TC 2.A.67.2) family. {ECO:0000305}.
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DR EMBL; AB190912; BAE91882.1; -; mRNA.
DR EMBL; AP002855; BAB17205.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF04453.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS71250.1; -; Genomic_DNA.
DR EMBL; AK121040; BAH00290.1; -; mRNA.
DR RefSeq; XP_015632041.1; XM_015776555.1.
DR AlphaFoldDB; Q9FTU1; -.
DR STRING; 4530.OS01T0238700-01; -.
DR PaxDb; Q9FTU1; -.
DR PRIDE; Q9FTU1; -.
DR EnsemblPlants; Os01t0238700-01; Os01t0238700-01; Os01g0238700.
DR GeneID; 4326360; -.
DR Gramene; Os01t0238700-01; Os01t0238700-01; Os01g0238700.
DR KEGG; osa:4326360; -.
DR eggNOG; ENOG502QQ2H; Eukaryota.
DR HOGENOM; CLU_015477_2_0_1; -.
DR InParanoid; Q9FTU1; -.
DR OMA; IEFCIAF; -.
DR OrthoDB; 525938at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR Genevisible; Q9FTU1; OS.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IBA:GO_Central.
DR GO; GO:0035673; F:oligopeptide transmembrane transporter activity; IEA:InterPro.
DR InterPro; IPR004813; OPT.
DR InterPro; IPR045035; YSL-like.
DR PANTHER; PTHR31645; PTHR31645; 1.
DR Pfam; PF03169; OPT; 1.
DR TIGRFAMs; TIGR00728; OPT_sfam; 1.
PE 2: Evidence at transcript level;
KW Membrane; Reference proteome; Transmembrane; Transmembrane helix;
KW Transport.
FT CHAIN 1..708
FT /note="Probable metal-nicotianamine transporter YSL1"
FT /id="PRO_0000363864"
FT TRANSMEM 32..52
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 56..76
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 104..124
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 147..167
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 216..236
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 256..276
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 310..330
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 390..410
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 418..438
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 450..470
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 503..523
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 568..588
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 608..628
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 638..658
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 708 AA; 75242 MW; C5C313D1DFA19613 CRC64;
MADPAGAGGE QEAPSVEAAF AGQPPPPWWQ QVTVRAVAVS VVLGTLFSFM AMRTGLTAGF
VPSFNMSASL LSFFIIKSWT RLMARCGVAS QPFTRQENVV VQTCVISCAT LSIYGGFTSY
LLAMNETVAK AAGGGTDGRN VYTLHTGKIV AFLFLVTFSS LFCTLPLRNT MIVDYKLIYP
SGSAVAGIVN SFHTPKGATK AKLQVNAMFK SVAGSFAWAF FQWFYTGGDG CGFHAFPLFG
LEAYKEKFYF DFSASLVGVG MICPHLINFS MLLGSISSSG FIWPALQAKQ GEWYTDPSPT
SFKGINGYKV PMGVSMVLGD CLFQLGAITV KAVQHYRKGR QEQKLAVDGA ADDGGGGCVP
DDDDENKWHA TYDERRRNQV FLSDGIPDQF AVAGYVALAA LSTALVPRIF PQIRYHHVAV
CYAVAPLLAF CNSYTSGLMD WSLATVYGKL AIFVVGASVG AASGGVIAGL AACGVMMVVI
GDAAELMHDF KTAYLTLTSP VSMFASQAIG TALGCVVNPA VFLAFRWLAG AEHPPGDPRS
AYAAPMAVAY RGIAVLGVEG VGTLPRHAIA LCAACFAAAV FLDTAGAAAR AARWRVGGWV
PNPMAMAIPF FVGPTFAIDM CVGSLLLMAW RRADRQGAAT LAVVVASGLI CGEGLWTLPS
AVLAMLKVQP PICMKFLSRS QIQEVRQHFV LGAADIQPAV TLTHHHHQ
