YSL3_ORYSJ
ID YSL3_ORYSJ Reviewed; 683 AA.
AC Q6AVD0; Q25CI3;
DT 10-FEB-2009, integrated into UniProtKB/Swiss-Prot.
DT 10-FEB-2009, sequence version 2.
DT 25-MAY-2022, entry version 76.
DE RecName: Full=Probable metal-nicotianamine transporter YSL3;
DE AltName: Full=Protein YELLOW STRIPE LIKE 3;
DE Short=OsYSL3;
GN Name=YSL3; OrderedLocusNames=Os05g0251900, LOC_Os05g16280;
GN ORFNames=OJ1171_H02.13;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2), GENE FAMILY, AND NOMENCLATURE.
RC STRAIN=cv. Nipponbare;
RX PubMed=15255870; DOI=10.1111/j.1365-313x.2004.02146.x;
RA Koike S., Inoue H., Mizuno D., Takahashi M., Nakanishi H., Mori S.,
RA Nishizawa N.K.;
RT "OsYSL2 is a rice metal-nicotianamine transporter that is regulated by iron
RT and expressed in the phloem.";
RL Plant J. 39:415-424(2004).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16261349; DOI=10.1007/s00438-005-0039-y;
RA Cheng C.-H., Chung M.C., Liu S.-M., Chen S.-K., Kao F.Y., Lin S.-J.,
RA Hsiao S.-H., Tseng I.C., Hsing Y.-I.C., Wu H.-P., Chen C.-S., Shaw J.-F.,
RA Wu J., Matsumoto T., Sasaki T., Chen H.-C., Chow T.-Y.;
RT "A fine physical map of the rice chromosome 5.";
RL Mol. Genet. Genomics 274:337-345(2005).
RN [3]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [5]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
CC -!- FUNCTION: May be involved in the transport of nicotianamine-chelated
CC metals. {ECO:0000250}.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q6AVD0-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q6AVD0-2; Sequence=VSP_036328;
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to a competing acceptor splice
CC site. {ECO:0000305}.
CC -!- SIMILARITY: Belongs to the YSL (TC 2.A.67.2) family. {ECO:0000305}.
CC -!- SEQUENCE CAUTION:
CC Sequence=AAT93878.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
CC Sequence=BAF16945.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};
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DR EMBL; AB190913; BAE91883.1; -; mRNA.
DR EMBL; AC104274; AAT93878.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP008211; BAF16945.1; ALT_SEQ; Genomic_DNA.
DR EMBL; AP014961; BAS93030.1; -; Genomic_DNA.
DR RefSeq; XP_015638994.1; XM_015783508.1. [Q6AVD0-1]
DR RefSeq; XP_015638995.1; XM_015783509.1. [Q6AVD0-2]
DR AlphaFoldDB; Q6AVD0; -.
DR STRING; 4530.OS05T0251900-00; -.
DR PRIDE; Q6AVD0; -.
DR EnsemblPlants; Os05t0251900-00; Os05t0251900-00; Os05g0251900. [Q6AVD0-2]
DR GeneID; 4338223; -.
DR Gramene; Os05t0251900-00; Os05t0251900-00; Os05g0251900. [Q6AVD0-2]
DR KEGG; osa:4338223; -.
DR eggNOG; ENOG502QQ2H; Eukaryota.
DR InParanoid; Q6AVD0; -.
DR OMA; AYITCAA; -.
DR OrthoDB; 525938at2759; -.
DR Proteomes; UP000000763; Chromosome 5.
DR Proteomes; UP000059680; Chromosome 5.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0016020; C:membrane; IBA:GO_Central.
DR GO; GO:0035673; F:oligopeptide transmembrane transporter activity; IEA:InterPro.
DR InterPro; IPR004813; OPT.
DR InterPro; IPR045035; YSL-like.
DR PANTHER; PTHR31645; PTHR31645; 1.
DR Pfam; PF03169; OPT; 1.
DR TIGRFAMs; TIGR00728; OPT_sfam; 1.
PE 2: Evidence at transcript level;
KW Alternative splicing; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix; Transport.
FT CHAIN 1..683
FT /note="Probable metal-nicotianamine transporter YSL3"
FT /id="PRO_0000363866"
FT TRANSMEM 29..49
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 58..78
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 97..117
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 142..162
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 204..224
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 265..285
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 309..329
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 372..392
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 404..424
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 448..468
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 490..510
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 553..573
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 595..615
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 628..648
FT /note="Helical"
FT /evidence="ECO:0000255"
FT VAR_SEQ 308..350
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:15255870"
FT /id="VSP_036328"
FT CONFLICT 451
FT /note="V -> F (in Ref. 1; BAE91883)"
FT /evidence="ECO:0000305"
SQ SEQUENCE 683 AA; 75022 MW; BF9582833E6AADF0 CRC64;
MDAMIGDPMS ATSVEAVFEK QPSPEFRELV TPRAMAVAVV LSVVICFVGM RIQMTAGIVP
ALNMPASILS FFLLKWLIRL LQSCGFPMLP FTRQENMFLL TCIITCLNLA LTSGFATNII
GMTSTVARSL ADDPDPRDIM DHVPIGKWIV YLFLVGMTGV LINVPFNQVM IIDYKLLFPT
GTVIAQLINS FHTPEGAYVA KMQVATIFKV FFGSFSWSMF QWFYTAGDDC GFQHFPTFGL
GLYKHRFYFD FSATYIGLGM ICPHIVNFGL FFGAIISWGF LYPFLETKRG QWYQTDSPTS
LNGQNGYKVF ISVTLIITDG MINFLTLITT ASINFYQLRK EHDLGLANYF KKHPSLNYDD
RKRIEVFLAN RIPIPVPVAA YITCAAISTI AIPAMFNQIK FYHLAVLYMV IPVVTFCNTY
ATGLTDWSVA PTYAKFTTFV FAAWIAKPGA VVASLLASGV IVAALHISSQ AMQDLKSGHM
TLTSPRAMVT GQIFGVAVGS ILCPCVFLAF QSTTKPNAPV GSKQSDYPCP FAGLYRAIGV
IGTGGVKELP KHCMTFCVVA FCVTVIIDAV VLVSQKRGWS IHRYIPSMTV IALPFFAGSY
FTIDMCVGSL LLLAWTRMNA KSAEMLSSAV AAGLICGEGL FTLPSALLNM FKVQPPMCMK
FLSGGEEVEA ADSFLNNLGT SRT
