YTRD_BACSU
ID YTRD_BACSU Reviewed; 325 AA.
AC O34953; Q795Q3;
DT 20-JAN-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JAN-1998, sequence version 1.
DT 03-AUG-2022, entry version 89.
DE RecName: Full=Probable ABC transporter permease YtrD;
GN Name=ytrD; OrderedLocusNames=BSU30430;
OS Bacillus subtilis (strain 168).
OC Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX NCBI_TaxID=224308;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=168;
RX PubMed=9387221; DOI=10.1099/00221287-143-11-3431;
RA Lapidus A., Galleron N., Sorokin A., Ehrlich S.D.;
RT "Sequencing and functional annotation of the Bacillus subtilis genes in the
RT 200 kb rrnB-dnaB region.";
RL Microbiology 143:3431-3441(1997).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=168;
RX PubMed=9384377; DOI=10.1038/36786;
RA Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V.,
RA Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R.,
RA Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S.,
RA Bruschi C.V., Caldwell B., Capuano V., Carter N.M., Choi S.-K.,
RA Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F.,
RA Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D.,
RA Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M.,
RA Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P.,
RA Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K.,
RA Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S.,
RA Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y.,
RA Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G.,
RA Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M.,
RA Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y.,
RA Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
RA Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A.,
RA Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M.,
RA Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S.,
RA Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E.,
RA Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA Yoshikawa H., Danchin A.;
RT "The complete genome sequence of the Gram-positive bacterium Bacillus
RT subtilis.";
RL Nature 390:249-256(1997).
RN [3]
RP FUNCTION, DEVELOPMENTAL STAGE, AND INDUCTION.
RX PubMed=10986249; DOI=10.1128/jb.182.19.5454-5461.2000;
RA Yoshida K., Fujita Y., Ehrlich S.D.;
RT "An operon for a putative ATP-binding cassette transport system involved in
RT acetoin utilization of Bacillus subtilis.";
RL J. Bacteriol. 182:5454-5461(2000).
CC -!- FUNCTION: Part of the ABC transporter complex YtrBCDEF that plays a
CC role in acetoin utilization during stationary phase and sporulation.
CC {ECO:0000269|PubMed:10986249}.
CC -!- SUBUNIT: The complex is composed of 2 ATP-binding proteins (YtrB and
CC YtrE), 2 transmembrane proteins (YtrC and YtrD) and a solute-binding
CC protein (YtrF). {ECO:0000305}.
CC -!- SUBCELLULAR LOCATION: Cell membrane {ECO:0000305}; Multi-pass membrane
CC protein {ECO:0000305}.
CC -!- DEVELOPMENTAL STAGE: Expressed early in the stationary phase.
CC {ECO:0000269|PubMed:10986249}.
CC -!- INDUCTION: Negatively regulated by YtrA. {ECO:0000269|PubMed:10986249}.
CC -!- SIMILARITY: Belongs to the ABC-5 integral membrane protein family.
CC {ECO:0000305}.
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DR EMBL; AF008220; AAC00250.1; -; Genomic_DNA.
DR EMBL; AL009126; CAB15021.1; -; Genomic_DNA.
DR PIR; B70000; B70000.
DR RefSeq; NP_390921.1; NC_000964.3.
DR RefSeq; WP_004398887.1; NZ_JNCM01000036.1.
DR AlphaFoldDB; O34953; -.
DR STRING; 224308.BSU30430; -.
DR TCDB; 3.A.1.153.1; the atp-binding cassette (abc) superfamily.
DR PaxDb; O34953; -.
DR PRIDE; O34953; -.
DR EnsemblBacteria; CAB15021; CAB15021; BSU_30430.
DR GeneID; 936438; -.
DR KEGG; bsu:BSU30430; -.
DR PATRIC; fig|224308.179.peg.3300; -.
DR OMA; LFWIWGV; -.
DR BioCyc; BSUB:BSU30430-MON; -.
DR Proteomes; UP000001570; Chromosome.
DR GO; GO:0016021; C:integral component of membrane; IEA:UniProtKB-KW.
DR GO; GO:0005886; C:plasma membrane; IEA:UniProtKB-SubCell.
DR InterPro; IPR023264; ABC_transptr_acetoin_YtrC/YtrD.
DR PRINTS; PR02026; YTRCYTRDABC.
PE 2: Evidence at transcript level;
KW Cell membrane; Membrane; Reference proteome; Transmembrane;
KW Transmembrane helix; Transport.
FT CHAIN 1..325
FT /note="Probable ABC transporter permease YtrD"
FT /id="PRO_0000360815"
FT TRANSMEM 16..36
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 63..83
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 113..133
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 146..166
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 179..199
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 233..253
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 272..292
FT /note="Helical"
FT /evidence="ECO:0000255"
FT TRANSMEM 298..318
FT /note="Helical"
FT /evidence="ECO:0000255"
SQ SEQUENCE 325 AA; 36435 MW; EDFCE98A7501E5B2 CRC64;
MPDSGLLYKE WRQNKVALVI TILVFILGNP LSILNMYLIY QGCVTGKENW VGPCVFSVDY
LNSSFISLFW IWGVVLAVSQ LGIERSKSFF DFTLSLPYTR GQIFHAKFLT GGMVIVVPQL
IGYVLSVLLI MLLKPDQAVY FHNYSLGMII VSMLAYSLVM AGGALTGNSF AQLLVSFTVA
ISPFLLISLP VINLEILFGG SIDFIHGPVP KWVQYFIPII YVDSKWAENS PYYLVIPAIM
TIIFYIIGYI SFVKMSNERN GYFFLWKPLN RPVQIIVIII GIMGFGYFGF TASESFAGYL
IGMGTGAVIG FLISYFAIYK KMKLL
