ID   YUBD_ECOLI              Reviewed;         227 AA.
AC   Q9S4X2; Q7AJQ5;
DT   28-NOV-2006, integrated into UniProtKB/Swiss-Prot.
DT   01-MAY-2000, sequence version 1.
DT   03-AUG-2022, entry version 103.
DE   RecName: Full=Putative methylase YubD;
DE            EC=2.1.1.-;
DE   AltName: Full=Type II methyltransferase M.EcoCR63FORFAP {ECO:0000303|PubMed:12654995};
DE            Short=M.EcoCR63FORFAP {ECO:0000303|PubMed:12654995};
GN   Name=yubD; Synonyms=yfeA; OrderedLocusNames=ECOK12F052;
OS   Escherichia coli (strain K12).
OG   Plasmid F.
OC   Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
OC   Enterobacteriaceae; Escherichia.
OX   NCBI_TaxID=83333;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RX   PubMed=10366527; DOI=10.1006/plas.1999.1390;
RA   Manwaring N.P., Skurray R.A., Firth N.;
RT   "Nucleotide sequence of the F plasmid leading region.";
RL   Plasmid 41:219-225(1999).
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=K12 / CR63;
RA   Shimizu H., Saitoh Y., Suda Y., Uehara K., Sampei G., Mizobuchi K.;
RT   "Complete nucleotide sequence of the F plasmid: its implications for
RT   organization and diversification of plasmid genomes.";
RL   Submitted (APR-2000) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NOMENCLATURE, AND SUBTYPE.
RX   PubMed=12654995; DOI=10.1093/nar/gkg274;
RA   Roberts R.J., Belfort M., Bestor T., Bhagwat A.S., Bickle T.A.,
RA   Bitinaite J., Blumenthal R.M., Degtyarev S.K., Dryden D.T., Dybvig K.,
RA   Firman K., Gromova E.S., Gumport R.I., Halford S.E., Hattman S.,
RA   Heitman J., Hornby D.P., Janulaitis A., Jeltsch A., Josephsen J., Kiss A.,
RA   Klaenhammer T.R., Kobayashi I., Kong H., Krueger D.H., Lacks S.,
RA   Marinus M.G., Miyahara M., Morgan R.D., Murray N.E., Nagaraja V.,
RA   Piekarowicz A., Pingoud A., Raleigh E., Rao D.N., Reich N., Repin V.E.,
RA   Selker E.U., Shaw P.C., Stein D.C., Stoddard B.L., Szybalski W.,
RA   Trautner T.A., Van Etten J.L., Vitor J.M., Wilson G.G., Xu S.Y.;
RT   "A nomenclature for restriction enzymes, DNA methyltransferases, homing
RT   endonucleases and their genes.";
RL   Nucleic Acids Res. 31:1805-1812(2003).
CC   -!- FUNCTION: A putative beta subtype methylase whose recognition site is
CC       unknown. {ECO:0000303|PubMed:12654995}.
CC   -!- SIMILARITY: Belongs to the N(4)/N(6)-methyltransferase family.
CC       {ECO:0000305}.
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DR   EMBL; AF106329; AAD47178.1; -; Genomic_DNA.
DR   EMBL; AP001918; BAA97922.1; -; Genomic_DNA.
DR   RefSeq; NP_061431.1; NC_002483.1.
DR   RefSeq; WP_000085939.1; NZ_CP014273.1.
DR   AlphaFoldDB; Q9S4X2; -.
DR   SMR; Q9S4X2; -.
DR   REBASE; 191875; M.Apa1468ORF1693P.
DR   REBASE; 191876; M.Apa1447ORF1821P.
DR   REBASE; 8255; M.EcoCR63FORFAP.
DR   PRIDE; Q9S4X2; -.
DR   PhylomeDB; Q9S4X2; -.
DR   PRO; PR:Q9S4X2; -.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0008170; F:N-methyltransferase activity; IEA:InterPro.
DR   GO; GO:0006306; P:DNA methylation; IEA:InterPro.
DR   Gene3D; 3.40.50.150; -; 1.
DR   InterPro; IPR002941; DNA_methylase_N4/N6.
DR   InterPro; IPR002052; DNA_methylase_N6_adenine_CS.
DR   InterPro; IPR001091; RM_Methyltransferase.
DR   InterPro; IPR029063; SAM-dependent_MTases_sf.
DR   Pfam; PF01555; N6_N4_Mtase; 1.
DR   PRINTS; PR00508; S21N4MTFRASE.
DR   SUPFAM; SSF53335; SSF53335; 1.
DR   PROSITE; PS00092; N6_MTASE; 1.
PE   3: Inferred from homology;
KW   Methyltransferase; Plasmid; Transferase.
FT   CHAIN           1..227
FT                   /note="Putative methylase YubD"
FT                   /id="PRO_0000262305"
SQ   SEQUENCE   227 AA;  25446 MW;  E96A6114077AF082 CRC64;
     MSRFIQGDCV RVMATFPGNA VDFILTDPPY LVGFRDRQGR TIAGDKTDEW LQPACNEMYR
     VLKKDALMVS FYGWNRVDRF MAAWKNAGFS VVGHLVFTKT YTSKAAYVGY RHECAYILAK
     GRPALPQKPL PDVLGWKYSG NRHHPTEKPV TSLQPLIESF THPNAIVLDP FAGSGSTCVA
     ALQSGRRYIG IELLEQYHRA GQQRLAAVQR AMQQGAANDD WFMPEAA