YVDD_BACSU
ID YVDD_BACSU Reviewed; 191 AA.
AC O06986; Q795G6;
DT 20-JAN-2009, integrated into UniProtKB/Swiss-Prot.
DT 01-JUL-1997, sequence version 1.
DT 03-AUG-2022, entry version 102.
DE RecName: Full=LOG family protein YvdD;
GN Name=yvdD; OrderedLocusNames=BSU34640;
OS Bacillus subtilis (strain 168).
OC Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.
OX NCBI_TaxID=224308;
RN [1]
RP NUCLEOTIDE SEQUENCE [GENOMIC DNA].
RC STRAIN=168;
RA Denizot F.;
RL Submitted (APR-1997) to the EMBL/GenBank/DDBJ databases.
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=168;
RX PubMed=9384377; DOI=10.1038/36786;
RA Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V.,
RA Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R.,
RA Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S.,
RA Bruschi C.V., Caldwell B., Capuano V., Carter N.M., Choi S.-K.,
RA Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F.,
RA Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D.,
RA Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M.,
RA Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P.,
RA Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K.,
RA Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S.,
RA Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y.,
RA Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G.,
RA Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J.,
RA Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C.,
RA Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S.,
RA Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B.,
RA Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S.,
RA Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M.,
RA Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y.,
RA Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J.,
RA Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A.,
RA Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M.,
RA Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S.,
RA Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E.,
RA Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K.,
RA Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E.,
RA Yoshikawa H., Danchin A.;
RT "The complete genome sequence of the Gram-positive bacterium Bacillus
RT subtilis.";
RL Nature 390:249-256(1997).
RN [3]
RP X-RAY CRYSTALLOGRAPHY (2.72 ANGSTROMS).
RG New York structural genomix research consortium (NYSGXRC);
RT "Crystal structure of a hypothetical protein yvdD - putative lysine
RT decarboxylase.";
RL Submitted (JAN-2005) to the PDB data bank.
CC -!- SIMILARITY: Belongs to the LOG family. {ECO:0000305}.
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DR EMBL; Z94043; CAB08033.1; -; Genomic_DNA.
DR EMBL; AL009126; CAB15469.1; -; Genomic_DNA.
DR PIR; D70033; D70033.
DR RefSeq; NP_391344.1; NC_000964.3.
DR RefSeq; WP_003228180.1; NZ_JNCM01000033.1.
DR PDB; 1T35; X-ray; 2.72 A; A/B/C/D/E/F/G/H=1-191.
DR PDBsum; 1T35; -.
DR AlphaFoldDB; O06986; -.
DR SMR; O06986; -.
DR STRING; 224308.BSU34640; -.
DR jPOST; O06986; -.
DR PaxDb; O06986; -.
DR PRIDE; O06986; -.
DR EnsemblBacteria; CAB15469; CAB15469; BSU_34640.
DR GeneID; 936504; -.
DR KEGG; bsu:BSU34640; -.
DR PATRIC; fig|224308.179.peg.3751; -.
DR eggNOG; COG1611; Bacteria.
DR InParanoid; O06986; -.
DR OMA; HQKPIGL; -.
DR PhylomeDB; O06986; -.
DR BioCyc; BSUB:BSU34640-MON; -.
DR EvolutionaryTrace; O06986; -.
DR Proteomes; UP000001570; Chromosome.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0016799; F:hydrolase activity, hydrolyzing N-glycosyl compounds; IBA:GO_Central.
DR GO; GO:0009691; P:cytokinin biosynthetic process; IBA:GO_Central.
DR InterPro; IPR005269; LOG.
DR InterPro; IPR031100; LOG_fam.
DR Pfam; PF03641; Lysine_decarbox; 1.
DR TIGRFAMs; TIGR00730; TIGR00730; 1.
PE 1: Evidence at protein level;
KW 3D-structure; Reference proteome.
FT CHAIN 1..191
FT /note="LOG family protein YvdD"
FT /id="PRO_0000360888"
FT STRAND 3..7
FT /evidence="ECO:0007829|PDB:1T35"
FT HELIX 17..31
FT /evidence="ECO:0007829|PDB:1T35"
FT STRAND 35..38
FT /evidence="ECO:0007829|PDB:1T35"
FT HELIX 44..54
FT /evidence="ECO:0007829|PDB:1T35"
FT TURN 55..57
FT /evidence="ECO:0007829|PDB:1T35"
FT STRAND 60..65
FT /evidence="ECO:0007829|PDB:1T35"
FT HELIX 70..73
FT /evidence="ECO:0007829|PDB:1T35"
FT STRAND 79..85
FT /evidence="ECO:0007829|PDB:1T35"
FT HELIX 86..97
FT /evidence="ECO:0007829|PDB:1T35"
FT STRAND 99..103
FT /evidence="ECO:0007829|PDB:1T35"
FT HELIX 108..119
FT /evidence="ECO:0007829|PDB:1T35"
FT STRAND 130..133
FT /evidence="ECO:0007829|PDB:1T35"
FT HELIX 135..137
FT /evidence="ECO:0007829|PDB:1T35"
FT HELIX 140..151
FT /evidence="ECO:0007829|PDB:1T35"
FT HELIX 159..162
FT /evidence="ECO:0007829|PDB:1T35"
FT STRAND 163..168
FT /evidence="ECO:0007829|PDB:1T35"
FT HELIX 169..177
FT /evidence="ECO:0007829|PDB:1T35"
SQ SEQUENCE 191 AA; 21054 MW; 49010177736C784E CRC64;
MKTICVFAGS NPGGNEAYKR KAAELGVYMA EQGIGLVYGG SRVGLMGTIA DAIMENGGTA
IGVMPSGLFS GEVVHQNLTE LIEVNGMHER KAKMSELADG FISMPGGFGT YEELFEVLCW
AQIGIHQKPI GLYNVNGYFE PMMKMVKYSI QEGFSNESHL KLIHSSSRPD ELIEQMQNYS
YPILEKKWTE I
